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N5_271_007G1_scaffold_5_prodigal-single.1__X__X__00280

Bact-Vir

N5_271_007G1_scaffold_5_prodigal-single.1__X__X__00280

Identity

Kingdom:
phage

Quality

80.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 165-315
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06207.17 best DUF1002 64.8 1.30e-17 63.6% 40.0%
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5tgtA02 1.10.10.350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.56 42.0 4.63e-01 84.1% 95.9%
3iieB03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.56 32.0 3.99e-01 85.4% 96.5%
4p9fA02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.53 38.0 3.87e-01 71.5% 80.6%
1c9bA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.52 36.0 4.11e-01 84.1% 100.0%
6p73A02 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.51 31.0 3.26e-01 88.1% 62.2%
1aisB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.51 30.0 3.55e-01 86.1% 90.4%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3577412 5054.1.1.83 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Tcp11 0.56 40.0 3.81e-01 72.8% 75.0%
5042605 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.52 30.0 3.70e-01 86.8% 91.4%
3714124 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.51 36.0 3.68e-01 71.5% 93.1%
4374397 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.51 31.0 3.40e-01 76.8% 72.8%
3582609 101.1.10.7 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.51 38.0 4.21e-01 84.1% 100.0%
5076381 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.50 31.0 3.70e-01 84.8% 93.0%
5064400 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.50 31.0 3.74e-01 84.8% 96.8%
D2 medium residues 29-41_76-119
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06207.17 best DUF1002 40.5 3.20e-10 96.5% 18.6%
D3 medium residues 42-75_120-156
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06207.17 best DUF1002 51.1 1.90e-13 54.9% 16.8%
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2y7eB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 37.0 2.48e-01 70.4% 81.7%
3di1A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 36.0 2.50e-01 73.2% 86.6%
2ee4A01 1.10.555.10 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein 0.51 40.0 3.01e-01 88.7% 81.8%
3oqvA00 3.40.50.11710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cyclodipeptide synthase 0.51 42.0 3.14e-01 98.6% 73.5%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4807858 304.48.1.11 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol 0.56 29.0 3.29e-01 76.1% 66.0%
3282701 7573.1.1.0 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like 0.53 45.0 3.38e-01 97.2% 45.3%