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N9-5

Euk-Vir

Macaca_nemestrina_rhadinovirus_2

N9-5__YP_010084611__Macaca_nemestrina_rhadinovirus_2__123630

Identity

Accession:
YP_010084611 ↗
Protein ID:
N9-5
Kingdom:
euk

Quality

78.0 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Rhadinovirus› Macaca_nemestrina_rhadinovirus_2

TaxID: 123630

Cluster

View cluster (18 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-120
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hlyA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.89 85.0 8.44e-01 100.0% 97.2%
1if1B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.86 78.0 7.85e-01 100.0% 95.2%
2o61A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.84 80.0 7.81e-01 100.0% 99.1%
2pi0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.84 73.0 7.65e-01 100.0% 99.0%
4p55B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 67.0 6.99e-01 100.0% 96.9%
5deqB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 40.0 4.36e-01 100.0% 78.3%
1vtnC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 42.0 4.29e-01 100.0% 70.6%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 37.0 3.80e-01 100.0% 69.8%
1jeqA05 1.10.720.30 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain 0.57 29.0 3.74e-01 99.0% 96.1%
4bpe700 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 34.0 3.52e-01 100.0% 61.4%
4kt5C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 35.0 3.72e-01 100.0% 78.4%
6torA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 34.0 3.10e-01 95.2% 47.9%
4j6oA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.51 37.0 2.80e-01 76.0% 87.7%
6ctzA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 33.0 3.50e-01 92.3% 75.3%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
223480 101.1.2.11 ↗ alpha arrays › HTH › HTH › winged helix domain › IRF 0.89 85.0 8.44e-01 100.0% 97.2%
3547704 101.1.2.11 ↗ alpha arrays › HTH › HTH › winged helix domain › IRF 0.89 85.0 8.15e-01 100.0% 90.4%
3527527 101.1.2.11 ↗ alpha arrays › HTH › HTH › winged helix domain › IRF 0.86 81.0 7.84e-01 100.0% 91.3%
3772154 101.1.2.11 ↗ alpha arrays › HTH › HTH › winged helix domain › IRF 0.83 78.0 7.37e-01 100.0% 90.2%
1546475 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 70.0 7.03e-01 100.0% 97.1%
3797700 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 43.0 4.36e-01 100.0% 75.0%
4940261 101.1.2.54 ↗ alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.61 40.0 4.59e-01 100.0% 98.6%
4947850 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 44.0 4.39e-01 100.0% 74.3%
4990676 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.60 43.0 4.30e-01 100.0% 70.9%
4017175 101.1.2.312 ↗ alpha arrays › HTH › HTH › winged helix domain › MSC 0.59 45.0 3.43e-01 100.0% 33.9%
3174361 101.1.2.312 ↗ alpha arrays › HTH › HTH › winged helix domain › MSC 0.59 42.0 3.25e-01 100.0% 32.4%
3735293 101.1.2.312 ↗ alpha arrays › HTH › HTH › winged helix domain › MSC 0.59 45.0 3.38e-01 100.0% 32.3%
3895552 101.1.2.4 ↗ alpha arrays › HTH › HTH › winged helix domain › Forkhead 0.59 40.0 3.77e-01 100.0% 56.2%
5076562 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 42.0 4.29e-01 100.0% 77.0%
5046134 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 39.0 3.50e-01 100.0% 48.3%
4971711 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 42.0 3.95e-01 100.0% 62.4%
5075771 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.55 36.0 3.58e-01 100.0% 62.7%
3483771 101.1.2.394 ↗ alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.55 38.0 3.92e-01 100.0% 77.9%
3738674 101.1.2.207 ↗ alpha arrays › HTH › HTH › winged helix domain › TFC3_eWH 0.55 40.0 3.97e-01 100.0% 73.6%
None — 0.54 35.0 3.46e-01 100.0% 59.1%
3853184 101.1.2.68 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.53 42.0 3.77e-01 100.0% 59.4%
4964519 101.1.9.154 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF5815 0.53 41.0 3.66e-01 86.5% 56.9%
3740981 328.7.1.1 ↗ a+b two layers › IF3-like › Smr domain › Smr domain › Smr 0.52 33.0 3.61e-01 96.2% 78.8%
3304252 320.1.1.3 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain › YlmH_1st 0.52 31.0 3.62e-01 100.0% 87.1%
3823393 320.1.1.3 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain › YlmH_1st 0.52 31.0 3.52e-01 100.0% 81.3%
3597257 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 34.0 3.79e-01 100.0% 88.7%
3637726 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 43.0 4.26e-01 100.0% 85.5%
3889562 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 43.0 4.29e-01 100.0% 90.0%
3481547 101.1.2.68 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.51 39.0 3.55e-01 100.0% 59.3%
D2 high residues 206-383
PDB
Domain cluster: rep: JM98__YP_238401__Macaca_fuscata_rhadinovirus__272551__D238-410
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10401.15 best IRF-3 32.5 1.00e-07 91.0% 80.6%