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N9-7

Euk-Vir

Macaca_nemestrina_rhadinovirus_2

N9-7__YP_010084613__Macaca_nemestrina_rhadinovirus_2__123630

Identity

Accession:
YP_010084613 ↗
Protein ID:
N9-7
Kingdom:
euk

Quality

79.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-122
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00605.24 best IRF 49.3 7.50e-13 98.1% 94.3%
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pi0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.86 73.0 7.76e-01 100.0% 99.0%
1if1B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.86 76.0 7.76e-01 100.0% 95.2%
4hlyA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.84 76.0 7.69e-01 100.0% 97.2%
2o61A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 77.0 7.70e-01 100.0% 99.1%
4p55B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 63.0 6.63e-01 100.0% 96.9%
7uuim02 1.10.1580.10 Mainly Alpha › Orthogonal Bundle › Conserved Hypothetical Protein Ylqf; Chain: A; domain 2 › 0.63 31.0 3.50e-01 99.1% 59.3%
3cuqB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 37.0 4.14e-01 100.0% 87.5%
3keyA01 1.10.10.1080 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain 0.57 42.0 4.51e-01 99.1% 96.6%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 36.0 3.74e-01 100.0% 70.8%
4myzC00 6.10.250.3430 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.55 27.0 3.78e-01 70.1% 98.0%
4q5eA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 35.0 4.00e-01 91.6% 90.7%
1sw2A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.55 45.0 3.88e-01 87.9% 77.1%
1uv7A00 3.30.1360.100 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM 0.55 37.0 4.17e-01 98.1% 96.1%
1khcA02 1.10.720.50 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › PWWP, helical domain 0.54 34.0 3.97e-01 77.6% 95.7%
1yg2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 31.0 3.44e-01 100.0% 75.9%
2klqA00 1.20.58.870 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 40.0 3.94e-01 100.0% 80.7%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3547704 101.1.2.11 alpha arrays › HTH › HTH › winged helix domain › IRF 0.88 82.0 7.96e-01 100.0% 90.4%
3527527 101.1.2.11 alpha arrays › HTH › HTH › winged helix domain › IRF 0.87 81.0 7.91e-01 100.0% 91.3%
223480 101.1.2.11 alpha arrays › HTH › HTH › winged helix domain › IRF 0.84 76.0 7.69e-01 100.0% 97.2%
3772154 101.1.2.11 alpha arrays › HTH › HTH › winged helix domain › IRF 0.84 79.0 7.51e-01 100.0% 90.2%
1546475 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 66.0 6.66e-01 100.0% 97.1%
3676148 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.68 47.0 4.46e-01 100.0% 60.8%
3477133 101.1.2.186 alpha arrays › HTH › HTH › winged helix domain › ASH2L-like_WH 0.67 46.0 4.58e-01 100.0% 68.2%
3314406 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.67 45.0 4.32e-01 100.0% 59.2%
3310294 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.65 45.0 3.85e-01 100.0% 44.1%
3439148 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.64 43.0 3.72e-01 100.0% 42.3%
4972865 101.1.2.896 alpha arrays › HTH › HTH › winged helix domain › DUF2551 0.63 39.0 3.90e-01 100.0% 58.4%
3645078 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.63 43.0 4.33e-01 100.0% 69.1%
3434805 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.62 44.0 4.49e-01 100.0% 75.2%
3676524 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.62 44.0 4.20e-01 100.0% 61.5%
3440716 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.62 43.0 4.08e-01 100.0% 60.0%
3655482 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.61 43.0 3.66e-01 100.0% 43.3%
3652534 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.61 42.0 3.90e-01 100.0% 55.0%
3204619 101.1.2.57 alpha arrays › HTH › HTH › winged helix domain › EAP30 0.60 40.0 3.63e-01 100.0% 49.3%
3422463 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.60 44.0 4.45e-01 100.0% 79.0%
3868765 101.1.2.178 alpha arrays › HTH › HTH › winged helix domain › HTH_61 0.59 40.0 4.24e-01 100.0% 78.9%
3501333 101.1.2.12 alpha arrays › HTH › HTH › winged helix domain › DEP 0.59 43.0 4.28e-01 100.0% 72.2%
3800806 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 31.0 3.69e-01 99.1% 77.1%
3662349 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.58 43.0 4.20e-01 100.0% 70.0%
3253867 101.1.2.68 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.58 39.0 3.67e-01 100.0% 55.6%
3323745 101.1.2.462 alpha arrays › HTH › HTH › winged helix domain › DUF7647 0.56 50.0 3.97e-01 100.0% 58.3%
3743308 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 37.0 3.83e-01 100.0% 72.0%
3785490 101.1.2.57 alpha arrays › HTH › HTH › winged helix domain › EAP30 0.55 38.0 3.51e-01 100.0% 51.3%
3738271 101.1.2.166 alpha arrays › HTH › HTH › winged helix domain › MCM6_C 0.55 41.0 4.08e-01 100.0% 76.4%
3278701 7523.1.1.17 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › OpuAC 0.55 44.0 3.79e-01 86.9% 73.7%
3236247 101.1.2.4 alpha arrays › HTH › HTH › winged helix domain › Forkhead 0.55 40.0 4.11e-01 100.0% 81.0%
3176821 103.12.1.5 alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › GCR1_C 0.55 38.0 3.90e-01 72.0% 95.2%
3801946 101.1.2.462 alpha arrays › HTH › HTH › winged helix domain › DUF7647 0.55 49.0 4.34e-01 100.0% 81.3%
3622571 101.1.2.12 alpha arrays › HTH › HTH › winged helix domain › DEP 0.55 43.0 4.12e-01 100.0% 72.8%
3317316 101.1.2.68 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.53 36.0 3.37e-01 100.0% 54.3%
3742852 101.1.2.147 alpha arrays › HTH › HTH › winged helix domain › ORC4_C 0.51 41.0 3.87e-01 100.0% 70.8%
3173183 101.1.2.134 alpha arrays › HTH › HTH › winged helix domain › Stn1_C 0.51 39.0 4.13e-01 100.0% 100.0%
3174361 101.1.2.312 alpha arrays › HTH › HTH › winged helix domain › MSC 0.51 40.0 3.19e-01 100.0% 39.5%
3519677 101.1.2.4 alpha arrays › HTH › HTH › winged helix domain › Forkhead 0.50 39.0 3.59e-01 100.0% 63.6%
5044477 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 36.0 3.76e-01 100.0% 83.0%
D2 high residues 131-354
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10401.15 best IRF-3 37.3 3.40e-09 69.2% 71.7%
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5bviA00 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.80 63.0 6.93e-01 84.8% 97.8%
5e50A01 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.80 37.0 5.55e-01 75.4% 100.0%
2w3oB00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.77 36.0 5.41e-01 79.0% 100.0%
3dshA01 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.76 64.0 6.71e-01 85.7% 96.0%
1zoqA00 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.76 61.0 6.64e-01 92.9% 97.4%
7cd1D01 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.75 56.0 6.28e-01 78.1% 96.0%
4r9pA00 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.75 60.0 6.26e-01 83.0% 88.6%
4h87A00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.72 40.0 5.35e-01 95.5% 98.4%
3ld7A00 2.60.320.10 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain 0.63 28.0 4.15e-01 81.7% 100.0%
3d33A00 2.60.40.3080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 29.0 4.28e-01 79.0% 100.0%
1d2oA01 2.60.40.1140 Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain 0.56 28.0 3.84e-01 79.0% 95.3%
1kt0A02 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.55 24.0 3.36e-01 84.4% 80.7%
1vu2300 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 25.0 3.33e-01 96.4% 79.5%
2pnqA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.53 41.0 3.46e-01 80.8% 92.4%
2bv4A00 2.60.120.400 Mainly Beta › Sandwich › Jelly Rolls › Calcium-mediated lectin 0.51 26.0 3.61e-01 88.8% 96.5%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3912381 73.1.1.6 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 0.82 66.0 6.70e-01 84.8% 84.1%
3772155 73.1.1.6 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 0.80 65.0 6.56e-01 83.0% 83.1%
3490466 73.1.1.6 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 0.80 48.0 6.22e-01 95.5% 100.0%
3796291 73.1.1.3 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › MH2 0.80 59.0 6.38e-01 83.5% 87.2%
3470623 73.1.1.6 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 0.79 62.0 6.53e-01 81.2% 89.0%
3899206 73.1.1.6 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 0.79 62.0 6.46e-01 84.8% 87.3%
3797402 73.1.1.0 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.79 59.0 6.37e-01 83.5% 88.2%
2142307 73.1.1.6 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 0.79 60.0 6.54e-01 86.2% 92.1%
3738478 73.1.1.1 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.79 37.0 5.49e-01 73.7% 100.0%
3270361 73.1.1.9 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA_2 0.78 39.0 5.55e-01 78.1% 98.2%
3914798 73.1.1.6 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 0.78 64.0 6.75e-01 83.9% 94.5%
169139 73.1.1.6 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 0.77 64.0 6.31e-01 85.7% 83.1%
3933148 73.1.1.3 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › MH2 0.77 61.0 6.22e-01 83.0% 84.2%
3895000 73.1.1.6 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 0.76 60.0 6.44e-01 85.7% 91.9%
3933647 73.1.1.3 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › MH2 0.76 61.0 6.49e-01 83.5% 93.0%
3912511 73.1.1.3 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › MH2 0.76 62.0 6.51e-01 84.8% 92.2%
3939212 73.1.1.3 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › MH2 0.76 61.0 6.21e-01 83.5% 88.8%
2722184 73.1.1.3 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › MH2 0.75 56.0 6.29e-01 79.5% 95.0%
3999204 73.1.1.3 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › MH2 0.75 60.0 6.46e-01 83.5% 94.9%
3887924 73.1.1.6 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 0.75 62.0 6.47e-01 84.8% 92.7%
3247678 73.1.1.3 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › MH2 0.75 60.0 6.39e-01 82.1% 96.9%
3409563 73.1.1.3 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › MH2 0.75 61.0 6.24e-01 83.5% 88.8%
2069 73.1.1.6 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 0.74 61.0 5.99e-01 85.7% 79.5%
3234709 73.1.1.3 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › MH2 0.74 65.0 6.76e-01 93.3% 98.6%
3291725 73.1.1.0 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.72 37.0 5.13e-01 80.4% 97.4%
3256305 11.1.1.897 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Beta-sand_DEX1 0.70 25.0 3.50e-01 94.6% 63.6%
3592884 73.1.1.0 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.70 40.0 5.27e-01 77.2% 100.0%
3709505 73.1.1.0 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.68 39.0 5.16e-01 74.6% 100.0%
3784361 73.1.1.1 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.66 35.0 4.86e-01 71.4% 100.0%
4072119 11.1.1.203 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LacZ_4 0.56 24.0 3.33e-01 97.8% 78.2%
3725294 72.1.1.0 beta sandwiches › gamma-Crystallin-like › gamma-Crystallin-like › gamma-Crystallin-like 0.54 23.0 3.42e-01 79.9% 90.5%
3397051 210.2.1.1 a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.51 40.0 3.22e-01 80.4% 94.4%
5036343 2004.1.1.90 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CobA_CobO_BtuR 0.50 18.0 2.82e-01 92.9% 82.5%