←Back to structures

NAD-dependent_DNA_ligase

Euk-Vir

Mythimna_separata_entomopoxvirus_L

NAD-dependent_DNA_ligase__YP_008003741__Mythimna_separata_entomopoxvirus_L__1293572

Identity

Accession:
YP_008003741 ↗
Protein ID:
NAD-dependent_DNA_ligase
Kingdom:
euk

Quality

83.3 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Betaentomopoxvirus› Mythimna_separata_entomopoxvirus_'L'

TaxID: 1293572

Cluster

View cluster (18 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-78
PDB
Domain cluster: rep: NAD-dependent_DNA_ligase__YP_008004602__Choristoneura_rosaceana_entomopoxvirus_L__1293539__D1-71
D2 high residues 293-384
PDB
Domain cluster: rep: LC680885.1__BDE75744.1__X__00206__D318-424
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03120.23 best OB_DNA_ligase 44.3 2.00e-11 84.8% 93.7%
D3 medium residues 79-117_232-288
PDB
Domain cluster: rep: ON649702__UVF62572.1__X__00095__D231-262_382-434
D4 medium residues 118-231
PDB
Domain cluster: rep: ATP-dependent_DNA_ligase__YP_009094561__Melbournevirus__1560514__D164-283
D5 medium residues 390-529
PDB
Domain cluster: rep: NAD-dependent_DNA_ligase__YP_010084817__Shrimp_hemocyte_iridescent_virus__2039780__D372-518
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2mx8A01 1.10.274.70 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain 0.52 39.0 4.31e-01 100.0% 97.3%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4343599 102.1.1.27 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.82 77.0 6.94e-01 100.0% 84.3%
4321047 102.1.1.27 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.82 77.0 7.09e-01 100.0% 83.9%
4358944 102.1.1.81 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2+HHH_5 0.82 76.0 6.97e-01 100.0% 82.2%
4199126 102.1.1.10 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD,HHH_2 0.81 76.0 6.92e-01 100.0% 83.9%
4204484 102.1.1.81 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2+HHH_5 0.81 76.0 7.00e-01 100.0% 84.0%
4074538 102.1.1.79 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD+HHH_2+HHH_5 0.81 75.0 6.76e-01 100.0% 84.2%
4370137 102.1.1.96 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH, DNA_ligase_ZBD, HHH_2, HHH_5 0.81 75.0 6.89e-01 100.0% 82.8%
4128948 102.1.1.81 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2+HHH_5 0.81 76.0 6.98e-01 100.0% 82.3%
4683217 102.1.1.10 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD,HHH_2 0.81 75.0 6.68e-01 100.0% 83.1%
4512339 102.1.1.99 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH, DNA_ligase_ZBD, HHH_2 0.81 75.0 6.84e-01 100.0% 82.8%
4527845 102.1.1.104 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH, HHH_2, HHH_5 0.81 75.0 6.92e-01 100.0% 85.1%
4302460 102.1.1.79 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD+HHH_2+HHH_5 0.81 75.0 7.00e-01 100.0% 84.7%
4468191 102.1.1.10 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD,HHH_2 0.81 75.0 6.85e-01 100.0% 82.2%
4275291 102.1.1.81 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2+HHH_5 0.80 75.0 6.84e-01 100.0% 83.2%
4038838 102.1.1.104 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH, HHH_2, HHH_5 0.80 75.0 6.98e-01 100.0% 84.7%
4058875 102.1.1.10 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD,HHH_2 0.80 74.0 6.72e-01 100.0% 81.6%
3837946 102.1.1.24 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2 0.80 75.0 6.82e-01 100.0% 79.4%
4353086 102.1.1.96 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH, DNA_ligase_ZBD, HHH_2, HHH_5 0.80 74.0 6.79e-01 100.0% 82.8%
4270770 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.80 75.0 6.82e-01 100.0% 79.4%
4346610 102.1.1.27 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.80 75.0 6.97e-01 100.0% 84.1%
4098561 102.1.1.96 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH, DNA_ligase_ZBD, HHH_2, HHH_5 0.80 74.0 6.65e-01 100.0% 78.4%
4332374 102.1.1.79 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD+HHH_2+HHH_5 0.80 74.0 6.77e-01 100.0% 82.8%
4103780 102.1.1.10 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD,HHH_2 0.80 74.0 6.41e-01 100.0% 83.8%
4031661 102.1.1.79 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD+HHH_2+HHH_5 0.80 74.0 6.60e-01 100.0% 78.4%
4659414 102.1.1.81 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2+HHH_5 0.80 74.0 6.75e-01 100.0% 82.8%
4668711 102.1.1.10 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD,HHH_2 0.79 73.0 6.59e-01 100.0% 79.5%
4292069 102.1.1.10 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD,HHH_2 0.79 74.0 6.72e-01 100.0% 83.3%
4051001 102.1.1.79 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD+HHH_2+HHH_5 0.79 73.0 6.71e-01 100.0% 82.8%
4147396 102.1.1.79 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD+HHH_2+HHH_5 0.79 73.0 6.70e-01 100.0% 82.8%
4122857 102.1.1.79 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD+HHH_2+HHH_5 0.79 72.0 6.76e-01 98.6% 85.3%
4246187 102.1.1.10 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD,HHH_2 0.79 73.0 6.51e-01 100.0% 84.6%
4128729 102.1.1.96 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH, DNA_ligase_ZBD, HHH_2, HHH_5 0.78 72.0 6.63e-01 100.0% 82.2%
4404544 102.1.1.81 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2+HHH_5 0.78 72.0 6.43e-01 100.0% 76.4%
4432595 102.1.1.96 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH, DNA_ligase_ZBD, HHH_2, HHH_5 0.78 72.0 6.60e-01 100.0% 82.8%
4150789 102.1.1.24 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2 0.77 71.0 6.12e-01 100.0% 83.7%