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NAD-dependent_epimerase_dehydratase

Euk-Vir

Acanthamoeba_polyphaga_moumouvirus

NAD-dependent_epimerase_dehydratase__YP_007354433__Acanthamoeba_polyphaga_moumouvirus__1269028

Identity

Accession:
YP_007354433 ↗
Protein ID:
NAD-dependent_epimerase_dehydratase
Kingdom:
euk

Quality

91.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-178_222-247
PDB
Pfam (6)
AccessionNameScoreE-valueQ covHMM cov
PF07993.19 best NAD_binding_4 32.3 8.10e-08 94.5% 59.7%
PF16363.12 GDP_Man_Dehyd 115.0 7.40e-33 94.0% 55.7%
PF01370.28 Epimerase 126.1 2.10e-36 87.5% 71.7%
PF01073.26 3Beta_HSD 81.3 8.90e-23 78.0% 46.4%
PF13460.13 NAD_binding_10 36.4 6.90e-09 75.5% 59.2%
PF02719.22 Polysacc_synt_2 57.7 1.60e-15 64.5% 43.7%
D2 high residues 181-219_250-286_303-320
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01370.28 best Epimerase 22.3 1.10e-04 69.2% 22.5%
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6dntA02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.93 89.0 8.40e-01 100.0% 100.0%
6wjaA02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.92 84.0 8.08e-01 95.7% 100.0%
1r6dA02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.90 79.0 7.85e-01 100.0% 89.6%
3rucA02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.89 85.0 8.24e-01 100.0% 95.1%
2p5yA02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.87 83.0 7.74e-01 100.0% 100.0%
6kv9A02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.87 83.0 7.98e-01 100.0% 100.0%
1gy8B01 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.87 82.0 7.31e-01 100.0% 98.4%
6bwlA02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.87 82.0 7.87e-01 100.0% 100.0%
2c5aA02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.86 81.0 7.01e-01 100.0% 72.8%
1ek6A01 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.86 81.0 7.23e-01 100.0% 96.0%
6vloC02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.85 81.0 7.88e-01 100.0% 93.1%
3sxpB02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.85 77.0 7.74e-01 100.0% 95.7%
4e5yD02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.83 78.0 7.63e-01 100.0% 95.0%
4lw8A02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.82 70.0 7.30e-01 94.7% 100.0%
1i24A02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.81 75.0 6.44e-01 100.0% 90.1%
1z7bA02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.81 69.0 7.13e-01 89.4% 96.6%
1bsvA02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.81 76.0 7.64e-01 100.0% 100.0%
3slgC02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.81 69.0 7.01e-01 89.4% 92.4%
4j2oA02 3.90.25.30 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › Polysaccharide biosynthesis protein, CapD-like domain 0.77 71.0 7.11e-01 97.9% 97.9%
6bwcB02 3.90.25.30 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › Polysaccharide biosynthesis protein, CapD-like domain 0.74 64.0 6.55e-01 91.5% 97.8%
7o71E01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.74 67.0 4.49e-01 96.8% 45.2%
2ydyA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.72 65.0 4.73e-01 100.0% 53.1%
4k3zA00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.64 44.0 3.05e-01 70.2% 34.5%
5hj9A00 3.40.800.10 Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Ureohydrolase domain 0.63 47.0 3.29e-01 79.8% 54.7%
5yw4A00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.60 53.0 3.63e-01 97.9% 40.8%
1akqA00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.58 42.0 3.67e-01 76.6% 100.0%
3r79A00 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.57 40.0 3.06e-01 74.5% 36.1%
2vhaA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.55 45.0 3.62e-01 87.2% 70.0%
2o1sB03 3.40.50.920 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 39.0 3.59e-01 74.5% 89.8%
1gv4A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 39.0 3.26e-01 73.4% 83.7%
2waaA02 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.55 40.0 3.13e-01 76.6% 96.7%
7exbA01 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.55 39.0 2.87e-01 76.6% 43.4%
8b3yA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.53 38.0 2.72e-01 76.6% 41.5%
5cgzA00 3.40.50.10320 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LmbE-like 0.53 37.0 2.82e-01 73.4% 54.6%
2xadA00 3.40.50.10320 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LmbE-like 0.53 42.0 3.16e-01 89.4% 92.7%
2o7rA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 38.0 2.74e-01 79.8% 58.0%
4psrA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.52 37.0 2.54e-01 76.6% 38.6%
3p6lA00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.51 36.0 2.62e-01 72.3% 31.3%
6mlyB02 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 37.0 2.72e-01 77.7% 89.7%
1di0A00 3.40.50.960 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Lumazine/riboflavin synthase 0.50 36.0 3.21e-01 77.7% 97.3%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4974482 2003.1.1.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.96 93.0 6.32e-01 100.0% 48.7%
4397020 2003.1.1.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.96 92.0 5.96e-01 100.0% 41.7%
5065706 2003.1.1.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.95 87.0 5.74e-01 94.7% 41.9%
2393176 2003.1.1.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.94 91.0 6.02e-01 100.0% 43.5%
4951564 2003.1.1.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.94 90.0 5.79e-01 100.0% 38.1%
5028141 2003.1.1.72 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GDP_Man_Dehyd 0.94 91.0 5.97e-01 100.0% 42.8%
4280364 2003.1.1.72 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GDP_Man_Dehyd 0.94 89.0 5.89e-01 97.9% 42.9%
5072297 2003.1.1.72 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GDP_Man_Dehyd 0.94 90.0 5.87e-01 100.0% 43.0%
5028662 2003.1.1.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.93 89.0 5.87e-01 100.0% 43.8%
2639601 2003.1.1.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.93 85.0 5.69e-01 95.7% 43.2%
5056857 2003.1.1.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.93 88.0 5.68e-01 100.0% 37.5%
4996763 2003.1.1.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.92 88.0 5.64e-01 100.0% 37.3%
4977710 2003.1.1.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.92 84.0 5.56e-01 94.7% 42.0%
2632478 2003.1.1.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.92 88.0 5.76e-01 100.0% 40.8%
4937982 2003.1.1.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.92 87.0 5.79e-01 98.9% 44.1%
5045819 2003.1.1.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.92 88.0 5.88e-01 100.0% 43.8%
5004805 2003.1.1.72 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GDP_Man_Dehyd 0.92 87.0 5.77e-01 98.9% 43.4%
None 0.91 87.0 5.78e-01 100.0% 42.2%
4975803 2003.1.1.72 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GDP_Man_Dehyd 0.91 88.0 5.73e-01 100.0% 40.9%
3669750 2003.1.1.240 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › 3Beta_HSD, Epimerase, GDP_Man_Dehyd 0.91 87.0 5.64e-01 100.0% 38.0%
5072181 2003.1.1.72 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GDP_Man_Dehyd 0.91 88.0 5.71e-01 100.0% 39.7%
4999404 2003.1.1.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.91 86.0 5.77e-01 98.9% 43.9%
3296997 2003.1.1.141 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Polysacc_synt_2, GDP_Man_Dehyd 0.91 87.0 5.73e-01 100.0% 40.9%
4011030 2003.1.1.72 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GDP_Man_Dehyd 0.91 87.0 5.54e-01 100.0% 40.8%
None 0.90 87.0 5.68e-01 100.0% 40.3%
None 0.90 87.0 5.53e-01 100.0% 37.8%
2709612 2003.1.1.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.90 86.0 5.75e-01 100.0% 42.9%
None 0.90 86.0 5.63e-01 100.0% 41.5%
4359326 2003.1.1.72 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GDP_Man_Dehyd 0.90 86.0 5.69e-01 100.0% 42.8%
None 0.90 85.0 5.63e-01 98.9% 42.8%
3996219 2003.1.1.72 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GDP_Man_Dehyd 0.90 86.0 5.61e-01 100.0% 40.9%
None 0.90 83.0 5.52e-01 95.7% 42.0%
5020625 2003.1.1.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.90 86.0 5.60e-01 100.0% 39.8%
None 0.89 85.0 5.58e-01 100.0% 45.3%
4997995 2003.1.1.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.89 86.0 5.73e-01 100.0% 43.7%
2142142 2003.1.1.72 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GDP_Man_Dehyd 0.88 84.0 5.61e-01 100.0% 43.1%
3284630 2003.1.1.141 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Polysacc_synt_2, GDP_Man_Dehyd 0.88 84.0 5.50e-01 100.0% 40.6%
4998956 2003.1.1.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.88 83.0 5.59e-01 100.0% 44.6%
3620187 2003.1.1.72 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GDP_Man_Dehyd 0.87 83.0 5.39e-01 100.0% 39.7%
3998925 2003.1.1.72 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GDP_Man_Dehyd 0.87 83.0 4.85e-01 100.0% 22.1%
5028863 2003.1.1.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.87 78.0 5.28e-01 93.6% 44.4%
4933897 2003.1.1.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.87 83.0 5.59e-01 100.0% 45.2%
None 0.87 80.0 5.38e-01 96.8% 44.3%
4980152 2003.1.1.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.87 83.0 5.37e-01 100.0% 38.3%
3232093 2003.1.1.141 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Polysacc_synt_2, GDP_Man_Dehyd 0.86 81.0 4.78e-01 100.0% 22.2%
4942564 2003.1.1.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.85 82.0 5.38e-01 100.0% 43.1%
5030643 2003.1.1.72 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GDP_Man_Dehyd 0.83 78.0 5.20e-01 100.0% 43.2%
4874096 2003.1.1.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.82 76.0 5.14e-01 98.9% 43.5%
328818 2003.1.1.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.81 77.0 5.07e-01 100.0% 43.2%
2643383 2003.1.1.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.81 77.0 5.13e-01 100.0% 40.5%
None 0.81 63.0 4.14e-01 80.9% 82.9%
2754919 2003.1.1.72 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GDP_Man_Dehyd 0.81 76.0 5.15e-01 100.0% 45.0%
2322846 2003.1.1.141 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Polysacc_synt_2, GDP_Man_Dehyd 0.81 63.0 4.13e-01 80.9% 82.9%
5079875 2003.1.1.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.77 71.0 4.91e-01 100.0% 42.7%
3723551 2003.1.1.84 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › PRISE 0.69 62.0 4.12e-01 100.0% 49.9%
5027880 4143.1.1.1 a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › THUMP 0.56 39.0 3.89e-01 70.2% 83.2%
5045539 4143.1.1.1 a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › THUMP 0.56 38.0 3.77e-01 70.2% 81.0%
3783753 7522.1.1.0 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like 0.56 40.0 3.61e-01 76.6% 74.8%
4157322 7523.1.1.4 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_3 0.53 37.0 3.06e-01 72.3% 88.2%
5011687 2004.1.1.67 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CbiA 0.52 44.0 3.31e-01 94.7% 97.6%
3194070 2004.1.1.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.52 36.0 2.68e-01 71.3% 70.0%
3291200 2007.5.1.8 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.51 39.0 3.01e-01 81.9% 89.3%
3655668 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 38.0 2.65e-01 78.7% 22.8%