←Back to structures

NC_000866.4__NP_813811.1T4p19000190

Bact-Vir

NC_000866.4__NP_813811.1__T4p190__00190

Identity

Accession:: NC_000866 ↗
Kingdom:: phage

Quality

91.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Tequatrovirus› Escherichia_phage_T4

TaxID: 2681598

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 2-62

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF12322.15 best	T4_baseplate	50.9	2.40e-13	100.0%	29.7%

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
8gr2A01	3.40.50.1110	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase	0.57	41.0	2.95e-01	78.7%	81.5%
2jugA01	1.10.10.1830	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Non-ribosomal peptide synthase, adenylation domain	0.56	38.0	3.97e-01	100.0%	80.0%
6pwkA02	3.20.20.450	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain	0.53	43.0	3.04e-01	100.0%	28.1%
2ve7C02	3.30.160.570	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ncd80 complex, Spc24 subunit	0.52	33.0	3.52e-01	86.9%	72.7%
2v25A01	3.40.190.10	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II	0.51	43.0	3.44e-01	96.7%	87.7%
3mq0B02	3.30.450.40	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain	0.50	40.0	3.06e-01	95.1%	84.9%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4210436	7090.1.1.1 ↗	extended segments › Glycyl radical domain › Glycyl radical domain › Glycyl radical domain › Gly_radical	0.59	45.0	3.53e-01	83.6%	40.0%
3945072	7090.1.1.1 ↗	extended segments › Glycyl radical domain › Glycyl radical domain › Glycyl radical domain › Gly_radical	0.58	44.0	4.37e-01	83.6%	76.9%
3433431	2005.1.1.3 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp	0.58	42.0	3.14e-01	80.3%	40.0%
3670890	2005.1.1.0 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains	0.57	43.0	3.36e-01	82.0%	63.7%
3999435	2007.1.19.2 ↗	a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin	0.57	44.0	3.01e-01	90.2%	94.3%
3450582	2005.1.1.0 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains	0.56	41.0	3.29e-01	80.3%	50.0%
3274344	387.1.1.0 ↗	few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related	0.56	31.0	3.39e-01	91.8%	64.0%
3655858	2005.1.1.3 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp	0.54	41.0	3.10e-01	83.6%	54.8%
4070661	3016.1.1.0 ↗	a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases	0.52	34.0	3.38e-01	88.5%	63.1%
3703384	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.52	38.0	2.40e-01	91.8%	15.5%
3926959	605.6.1.0 ↗	alpha duplicates or obligate multimers › ROP-like › HP1531-like › HP1531-like	0.52	35.0	3.20e-01	100.0%	50.6%
3667031	3016.1.1.0 ↗	a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases	0.51	33.0	3.16e-01	88.5%	54.7%
4976411	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.50	40.0	2.40e-01	90.2%	21.8%
1518722	7523.1.1.8 ↗	a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_1	0.50	34.0	2.57e-01	72.1%	86.4%