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NC_000867.1__NP_049898.1__PM2_09__00009

Bact-Vir

NC_000867.1__NP_049898.1__PM2_09__00009

Identity

Accession:
NC_000867 ↗
Kingdom:
phage

Quality

84.2 mean pLDDT

Taxonomy

Abadenavirae› Produgelaviricota› Belvinaviricetes› Vinavirales› Corticoviridae› Merivirus› Pseudoalteromonas_phage_PM2

TaxID: 2905728

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-68
PDB
Domain cluster: rep: MZ231001.1__QYS24879.1__fNO16879116_0023__00023__D5-54
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 47.0 4.96e-01 100.0% 94.6%
4pj2A00 2.40.128.460 Mainly Beta › Beta Barrel › Lipocalin › Periplasmic lysozyme inhibitor of I-type lysozyme 0.62 47.0 3.90e-01 83.1% 47.9%
2qkdA03 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.62 44.0 4.76e-01 78.5% 96.1%
1xkiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 53.0 4.27e-01 98.5% 75.8%
1mkeA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 49.0 3.88e-01 92.3% 65.3%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 49.0 3.95e-01 100.0% 93.0%
6qwrA01 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.57 45.0 3.42e-01 93.8% 97.9%
1g5hA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.57 40.0 2.65e-01 73.8% 28.7%
3nqzA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 40.0 3.77e-01 78.5% 90.5%
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.55 38.0 3.73e-01 73.8% 66.2%
1x47A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 40.0 3.72e-01 80.0% 72.4%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 40.0 4.04e-01 80.0% 90.9%
2l2mA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 40.0 3.94e-01 80.0% 82.9%
4mlgG00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 44.0 2.93e-01 100.0% 68.2%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 40.0 4.09e-01 86.2% 88.9%
1jv2B04 4.10.1240.30 Few Secondary Structures › Irregular › Hormone receptor fold › 0.52 39.0 3.57e-01 80.0% 93.0%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 38.0 3.88e-01 90.8% 90.3%
5c98B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.50 42.0 3.50e-01 100.0% 56.6%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3606500 375.8.1.1 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.75 51.0 5.29e-01 80.0% 76.7%
4460368 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 44.0 5.02e-01 70.8% 91.1%
4296071 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 52.0 3.86e-01 87.7% 73.5%
3783916 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 46.0 4.95e-01 84.6% 92.7%
3719595 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 48.0 4.97e-01 96.9% 93.3%
4345436 4325.1.1.1 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.62 39.0 3.79e-01 73.8% 56.0%
7726 4325.1.1.1 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.62 40.0 4.24e-01 73.8% 74.1%
4965187 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 44.0 4.47e-01 81.5% 78.5%
4243634 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.61 39.0 3.73e-01 73.8% 56.0%
3586566 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 44.0 4.65e-01 95.4% 92.7%
5003301 268.1.1.0 ↗ a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related 0.61 44.0 3.75e-01 76.9% 76.2%
3920905 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.60 48.0 3.95e-01 89.2% 64.5%
4188237 4325.1.1.1 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.60 38.0 4.09e-01 73.8% 76.4%
5075465 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.57 37.0 3.82e-01 73.8% 70.0%
4364271 325.1.7.14 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RPOC_hybrid 0.56 43.0 3.78e-01 84.6% 73.0%
3394539 7.1.1.1 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.56 41.0 3.54e-01 80.0% 64.5%
3514191 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 41.0 3.64e-01 100.0% 52.0%
3749496 5.1.3.99 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FG-GAP_3 0.56 48.0 2.97e-01 100.0% 80.0%
3726946 708.1.2.6 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › GFA 0.55 37.0 3.23e-01 72.3% 40.9%
3923801 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 43.0 3.92e-01 92.3% 76.8%
4010002 244.3.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.53 43.0 3.85e-01 92.3% 94.7%
5070992 4294.1.1.0 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.52 35.0 3.59e-01 83.1% 76.7%
3390004 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 42.0 3.67e-01 96.9% 67.3%
3284714 4325.1.1.1 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.51 33.0 3.38e-01 70.8% 69.8%