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NC_000929.1__NP_050646.1__Mup42__00042
Bact-VirNC_000929.1__NP_050646.1__Mup42__00042
Identity
- Accession:
- NC_000929 ↗
- Kingdom:
- phage
Quality
44.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 17-68
D2
medium
residues 160-247
Domain cluster:
rep: BK061476.1__DBA08236.1__X__00008__D134-245
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20155.5 best | TMP_3 | 41.1 | 2.30e-10 | 100.0% | 40.1% |
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2auwB02 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.61 | 43.0 | 4.68e-01 | 72.7% | 100.0% |
| 3t6gB00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.60 | 51.0 | 4.56e-01 | 98.9% | 94.0% |
| 1wgwA00 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.59 | 48.0 | 4.64e-01 | 88.6% | 84.8% |
| 1ic8A01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.58 | 42.0 | 4.16e-01 | 77.3% | 83.0% |
| 4rngC00 | 1.20.1280.290 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.55 | 34.0 | 3.48e-01 | 98.9% | 62.7% |
| 6k9pB02 | 1.20.1300.20 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Peptidase C65 Otubain, subdomain 2 | 0.55 | 40.0 | 3.39e-01 | 76.1% | 69.7% |
| 2qyuA04 | 1.10.4140.10 | Mainly Alpha › Orthogonal Bundle › effector protein (NleL) fold › effector protein (NleL) | 0.55 | 45.0 | 3.58e-01 | 92.0% | 90.7% |
| 1wxpA01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.55 | 33.0 | 3.41e-01 | 77.3% | 61.9% |
| 2jexA01 | 1.10.287.30 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › E2 (early) protein, N terminal domain, subdomain 1 | 0.54 | 39.0 | 3.82e-01 | 77.3% | 100.0% |
| 2a5yB01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.54 | 37.0 | 3.54e-01 | 72.7% | 73.4% |
| 4btfA01 | 1.20.930.20 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Adaptor protein Cbl, N-terminal domain | 0.52 | 36.0 | 3.52e-01 | 71.6% | 78.0% |
| 4pu7A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.52 | 36.0 | 3.85e-01 | 76.1% | 90.1% |
| 5f7qC01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 36.0 | 3.99e-01 | 75.0% | 100.0% |
| 5kbwB00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.51 | 43.0 | 3.49e-01 | 94.3% | 62.6% |
| 4nqwA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 33.0 | 3.74e-01 | 98.9% | 92.2% |
| 2ewfA02 | 1.20.1270.310 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.50 | 37.0 | 3.81e-01 | 78.4% | 96.3% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3164789 | 159.1.2.5 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › TMP_3 | 0.95 | 91.0 | 7.12e-01 | 100.0% | 54.5% |
| 3963765 | 159.1.2.5 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › TMP_3 | 0.81 | 74.0 | 5.67e-01 | 100.0% | 46.3% |
| 4967279 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.65 | 50.0 | 4.62e-01 | 84.1% | 64.3% |
| 4966498 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.63 | 49.0 | 4.86e-01 | 85.2% | 80.0% |
| 5082802 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.61 | 48.0 | 4.69e-01 | 86.4% | 80.0% |
| 4959335 | 601.48.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › vWA2 C-terminal domain › vWA2 C-terminal domain | 0.61 | 46.0 | 4.55e-01 | 93.2% | 75.8% |
| 3603171 | 3684.1.1.0 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like | 0.60 | 51.0 | 4.18e-01 | 98.9% | 82.9% |
| 3398252 | 601.4.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › NIT | 0.59 | 51.0 | 4.55e-01 | 98.9% | 93.8% |
| 5007716 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.59 | 44.0 | 4.76e-01 | 94.3% | 100.0% |
| 3931480 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.56 | 40.0 | 4.04e-01 | 100.0% | 73.3% |
| 3392659 | 3755.3.1.323 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Lips | 0.55 | 33.0 | 2.70e-01 | 95.5% | 29.7% |
| 3682662 | 7015.1.1.0 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain | 0.55 | 37.0 | 3.33e-01 | 70.5% | 64.6% |
| 3477766 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.55 | 33.0 | 3.40e-01 | 93.2% | 62.4% |
| 5024100 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 45.0 | 4.08e-01 | 98.9% | 76.2% |
| 3330936 | 5050.1.1.1 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr | 0.52 | 38.0 | 3.03e-01 | 76.1% | 73.0% |
| 3597445 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.52 | 38.0 | 3.95e-01 | 93.2% | 83.7% |
| 3435434 | 632.1.1.13 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Rx_N | 0.51 | 34.0 | 3.28e-01 | 96.6% | 59.0% |
| 5022580 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 36.0 | 3.65e-01 | 79.5% | 74.4% |
| 3934473 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.50 | 42.0 | 3.20e-01 | 94.3% | 88.4% |