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NC_000935.1__NP_050963.1__APSE-1_02__00002

Bact-Vir

NC_000935.1__NP_050963.1__APSE-1_02__00002

Identity

Accession:
NC_000935 ↗
Kingdom:
phage

Quality

80.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sendosyvirus› Hamiltonella_phage_APSE-1

TaxID: 2682836

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-85
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01381.29 best HTH_3 32.9 7.60e-08 58.3% 83.6%
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ybaA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.80 60.0 6.24e-01 77.4% 100.0%
2ox6D00 1.10.3100.10 Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Putative cytoplasmic protein 0.80 56.0 4.46e-01 76.2% 37.9%
7zviA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.80 57.0 4.96e-01 73.8% 54.9%
2xcjA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.80 55.0 5.58e-01 71.4% 88.1%
2mqkA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.78 57.0 6.34e-01 75.0% 100.0%
1x57A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.78 55.0 5.35e-01 72.6% 78.0%
1b0nA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.78 56.0 5.15e-01 73.8% 78.6%
1ic8A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.78 59.0 5.69e-01 79.8% 77.7%
2ef8A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.77 53.0 5.34e-01 73.8% 71.4%
3op9A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.75 50.0 5.54e-01 77.4% 85.3%
4yg1A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.74 52.0 5.55e-01 73.8% 84.7%
2auwB02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.74 50.0 5.36e-01 73.8% 82.9%
7ezyA01 1.10.3100.10 Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Putative cytoplasmic protein 0.73 51.0 4.63e-01 73.8% 53.9%
2a6cA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.72 51.0 5.32e-01 77.4% 81.6%
3pxpA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.72 55.0 5.30e-01 79.8% 73.1%
3fmyA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.70 48.0 5.26e-01 75.0% 90.9%
2o38A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.66 48.0 5.29e-01 85.7% 100.0%
4b43A01 1.10.10.2480 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.65 41.0 4.49e-01 82.1% 77.9%
1oksA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.62 39.0 4.60e-01 75.0% 100.0%
4heoA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.62 38.0 4.41e-01 73.8% 92.7%
2d6fC03 1.10.150.380 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › GatB domain, N-terminal subdomain 0.60 30.0 3.65e-01 72.6% 75.0%
3bbzA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.59 35.0 4.14e-01 71.4% 100.0%
1lkvX02 1.10.220.30 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Flagellar motor switch protein FliG, alpha-alpha superhelical domain 0.56 43.0 3.80e-01 84.5% 93.2%
4djhA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.55 46.0 3.28e-01 97.6% 100.0%
1b10A00 1.10.790.10 Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain 0.54 41.0 3.83e-01 81.0% 95.2%
2ib1A00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.53 37.0 3.66e-01 73.8% 94.5%
6jqsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 39.0 4.41e-01 78.6% 100.0%
4irlB02 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.52 39.0 3.81e-01 81.0% 87.1%
2l2dA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.52 37.0 3.93e-01 94.0% 86.3%
4dsfA04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.51 39.0 3.64e-01 84.5% 65.5%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None — 0.85 59.0 6.81e-01 72.6% 100.0%
4984278 101.1.4.17 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_26 0.84 61.0 6.44e-01 75.0% 90.7%
4930318 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.84 64.0 5.45e-01 79.8% 56.9%
3960854 101.1.4.18 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_31 0.84 58.0 6.03e-01 76.2% 76.9%
4957698 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.83 63.0 5.40e-01 79.8% 57.4%
None — 0.83 63.0 6.86e-01 84.5% 95.7%
4940014 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.83 59.0 6.26e-01 73.8% 90.7%
3949869 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.82 56.0 6.12e-01 76.2% 85.7%
317770 101.1.4.22 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › DUF4447 0.81 58.0 4.57e-01 79.8% 38.0%
3589590 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.81 56.0 6.47e-01 73.8% 100.0%
3588951 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.81 56.0 6.56e-01 73.8% 100.0%
3277922 101.1.4.18 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_31 0.81 54.0 5.69e-01 70.2% 76.0%
1779783 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.81 60.0 6.23e-01 77.4% 98.7%
4956880 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.80 54.0 5.91e-01 76.2% 82.9%
3278834 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.80 55.0 6.01e-01 72.6% 84.3%
4950501 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.80 56.0 6.29e-01 78.6% 92.3%
4405465 101.1.4.5 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HNF-1_N 0.80 60.0 5.70e-01 79.8% 73.0%
4114937 101.1.4.5 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HNF-1_N 0.80 60.0 5.39e-01 79.8% 63.5%
4994602 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.79 55.0 6.38e-01 78.6% 100.0%
3986597 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.79 53.0 5.28e-01 72.6% 67.1%
4970801 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.79 61.0 6.11e-01 84.5% 78.8%
5059226 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.79 57.0 5.82e-01 78.6% 77.5%
3166016 101.1.4.17 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_26 0.79 55.0 6.28e-01 71.4% 100.0%
5015557 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.78 59.0 5.66e-01 78.6% 75.8%
4990518 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.78 57.0 6.42e-01 83.3% 100.0%
3231460 101.1.4.5 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HNF-1_N 0.77 59.0 5.52e-01 79.8% 72.0%
3062945 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.77 54.0 5.82e-01 73.8% 84.5%
3967547 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.77 56.0 6.02e-01 83.3% 90.0%
3011019 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.77 51.0 5.97e-01 76.2% 100.0%
3604422 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.77 53.0 5.77e-01 73.8% 85.7%
5031888 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.76 58.0 5.94e-01 84.5% 83.7%
410670 101.1.4.18 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_31 0.76 55.0 5.47e-01 75.0% 79.1%
5082802 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.76 56.0 5.33e-01 78.6% 78.0%
4935348 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.75 58.0 5.99e-01 82.1% 92.5%
3278243 101.1.4.10 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › DUF1870 0.75 54.0 4.82e-01 76.2% 54.2%
5010377 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.75 52.0 5.70e-01 83.3% 87.1%
3280189 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.74 53.0 5.65e-01 83.3% 84.0%
4957032 101.1.4.18 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_31 0.74 57.0 5.48e-01 82.1% 83.2%
4966498 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.73 55.0 5.34e-01 81.0% 82.1%
4955745 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.72 47.0 5.27e-01 76.2% 87.7%
4589522 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.71 52.0 5.21e-01 76.2% 80.0%
5028710 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.71 51.0 5.39e-01 76.2% 84.0%
380799 101.1.4.23 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › MqsA_antitoxin 0.70 48.0 5.26e-01 75.0% 90.9%
3947056 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.70 52.0 5.55e-01 89.3% 94.3%
4071576 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.69 52.0 5.22e-01 78.6% 78.8%
4997274 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.69 49.0 3.85e-01 75.0% 38.9%
3965368 101.1.4.20 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_37 0.66 51.0 5.22e-01 85.7% 86.3%
3838667 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.66 48.0 4.95e-01 76.2% 80.0%
3983992 101.1.4.20 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_37 0.65 50.0 5.09e-01 85.7% 85.0%
2791 101.1.4.20 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_37 0.65 48.0 4.77e-01 84.5% 75.3%
3977908 101.1.4.20 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_37 0.64 53.0 5.11e-01 94.0% 82.1%
5030004 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.63 44.0 3.98e-01 71.4% 56.4%
3612783 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.61 45.0 4.18e-01 78.6% 90.9%