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NC_000935.1__NP_050968.1__APSE-1_07__00007

Bact-Vir

NC_000935.1__NP_050968.1__APSE-1_07__00007

Identity

Accession:
NC_000935 ↗
Kingdom:
phage

Quality

81.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 27-100
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1c48A00 2.40.50.70 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.92 80.0 8.30e-01 100.0% 98.6%
4bwgD00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.83 74.0 6.71e-01 95.9% 90.7%
6ro0F00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.82 75.0 6.81e-01 100.0% 89.8%
3a54A01 2.40.50.340 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.80 71.0 6.60e-01 100.0% 78.9%
1b44D00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.78 71.0 6.28e-01 100.0% 82.1%
1gm5A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.78 70.0 6.27e-01 100.0% 77.5%
3k7uC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.74 65.0 5.99e-01 100.0% 92.9%
5gqoA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.74 65.0 6.01e-01 100.0% 83.5%
2k50A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.73 65.0 5.82e-01 100.0% 83.7%
1oxxK02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.73 44.0 5.38e-01 78.4% 100.0%
5zg8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.73 66.0 5.89e-01 100.0% 78.4%
3k59A01 2.40.50.590 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › DNA polymerase B, N domain, beta-barrel 0.73 65.0 6.26e-01 100.0% 89.4%
4jbjA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.72 65.0 5.67e-01 100.0% 70.9%
2c9oB02 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.72 56.0 4.85e-01 100.0% 54.9%
1wydA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.72 65.0 5.83e-01 100.0% 75.5%
4jbmB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.72 63.0 5.84e-01 100.0% 82.3%
4dkaC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.71 64.0 6.13e-01 100.0% 98.8%
1e8oA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.70 47.0 4.76e-01 70.3% 89.2%
1l0wA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 63.0 5.55e-01 100.0% 77.4%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.69 52.0 5.42e-01 85.1% 88.1%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 43.0 4.56e-01 100.0% 72.3%
3u4zA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 58.0 5.15e-01 100.0% 73.4%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 42.0 4.28e-01 87.8% 67.6%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 42.0 4.48e-01 79.7% 80.3%
7k98B01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 56.0 4.84e-01 97.3% 86.0%
3rn5A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 56.0 5.27e-01 100.0% 81.5%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.64 44.0 3.98e-01 71.6% 55.8%
1iyjB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 55.0 4.82e-01 100.0% 75.4%
1v1pB02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 53.0 5.31e-01 100.0% 98.6%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 40.0 3.89e-01 83.8% 60.5%
2lssA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 49.0 5.08e-01 100.0% 98.6%
2jo6A00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.58 47.0 4.10e-01 87.8% 64.5%
1srqA01 3.30.1120.160 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.58 41.0 3.35e-01 94.6% 39.9%
3kksB00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.58 42.0 3.42e-01 79.7% 85.5%
3wirA03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.56 34.0 3.53e-01 82.4% 65.2%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.55 38.0 3.85e-01 100.0% 72.0%
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.55 49.0 4.18e-01 100.0% 81.0%
4ftxB01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.54 42.0 3.55e-01 85.1% 86.7%
3fvqA03 2.40.50.470 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 34.0 3.67e-01 83.8% 82.8%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.53 41.0 3.57e-01 86.5% 75.8%
4q05A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 43.0 2.86e-01 93.2% 73.1%
1uypA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 41.0 2.76e-01 86.5% 37.8%
2fblB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.50 43.0 3.41e-01 94.6% 46.6%
3tqfA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 37.0 2.99e-01 82.4% 84.2%
7nn3B01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 39.0 2.61e-01 86.5% 86.3%
1qw2A00 3.30.1980.10 Alpha Beta › 2-Layer Sandwich › Hypothetical protein Ta1206 fold › Hypothetical protein YunC 0.50 39.0 3.53e-01 85.1% 94.1%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3907752 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.81 74.0 6.51e-01 100.0% 81.0%
3586876 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.78 72.0 6.87e-01 100.0% 87.1%
3588305 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.78 72.0 6.75e-01 100.0% 84.3%
4052975 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.77 70.0 6.09e-01 100.0% 70.9%
5005288 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.76 69.0 5.36e-01 100.0% 81.3%
5012544 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.76 68.0 6.07e-01 100.0% 80.0%
3988063 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.75 60.0 6.34e-01 98.6% 98.5%
5043498 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.75 67.0 4.16e-01 97.3% 37.2%
5012547 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.75 65.0 6.13e-01 100.0% 78.9%
4465652 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.74 64.0 5.33e-01 100.0% 54.6%
3838219 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.74 68.0 6.48e-01 100.0% 90.6%
3276150 2.1.1.52 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Stn1 0.74 67.0 5.25e-01 100.0% 54.7%
1890287 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.74 65.0 6.01e-01 100.0% 83.5%
5014319 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.73 61.0 6.35e-01 98.6% 100.0%
4458313 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.72 65.0 5.78e-01 100.0% 77.1%
3789602 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.72 49.0 4.11e-01 70.3% 45.6%
3750640 220.1.1.38 beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.72 49.0 4.30e-01 70.3% 54.5%
4960870 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.72 65.0 6.11e-01 100.0% 85.4%
4943785 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.72 65.0 5.26e-01 100.0% 55.7%
4041632 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.72 65.0 5.19e-01 100.0% 75.9%
4093535 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.72 49.0 4.07e-01 71.6% 44.6%
4983579 2.2.1.0 beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins 0.71 60.0 6.12e-01 98.6% 98.6%
4953898 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.71 53.0 4.45e-01 85.1% 47.2%
3303657 2.1.1.284 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CDC24_OB3, CDC24_OB1 0.71 62.0 4.57e-01 100.0% 44.4%
4934734 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.71 53.0 4.34e-01 85.1% 44.0%
3164388 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.71 49.0 5.24e-01 83.8% 83.1%
3735661 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.70 48.0 4.24e-01 70.3% 56.2%
5069582 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 62.0 5.77e-01 100.0% 84.2%
5020098 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.70 52.0 5.34e-01 85.1% 82.9%
4271190 2.1.1.24 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CcmE 0.70 61.0 4.99e-01 100.0% 52.1%
4995609 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 61.0 4.96e-01 100.0% 57.2%
415 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.69 52.0 5.42e-01 85.1% 88.1%
4926892 220.1.1.87 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.68 46.0 4.04e-01 70.3% 52.2%
3164021 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.68 61.0 5.07e-01 100.0% 99.2%
3459866 2.1.1.143 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF936 0.68 60.0 5.02e-01 100.0% 62.3%
4028808 2.1.1.142 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › HROB 0.67 59.0 4.66e-01 100.0% 49.4%
3385864 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.67 50.0 5.41e-01 82.4% 98.3%
3387994 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.67 51.0 4.97e-01 85.1% 75.0%
4033510 2.2.1.6 beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins › SSL_OB 0.66 58.0 5.38e-01 100.0% 76.8%
3804273 2.1.1.143 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF936 0.66 58.0 4.66e-01 100.0% 53.3%
3721364 2.21.1.0 beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.66 59.0 5.11e-01 100.0% 74.8%
4033432 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.66 40.0 4.39e-01 89.2% 75.0%
4963351 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 44.0 3.82e-01 70.3% 47.5%
5035671 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.65 50.0 4.49e-01 86.5% 59.0%
3839111 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 55.0 5.22e-01 100.0% 84.4%
3988707 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.63 37.0 4.17e-01 87.8% 78.2%
5000498 896.1.1.1 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Ribosomal_L38e 0.62 42.0 4.59e-01 70.3% 91.7%
4996362 220.1.1.87 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.62 42.0 3.77e-01 70.3% 50.9%
3224246 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 41.0 3.77e-01 70.3% 51.9%
3387114 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.61 45.0 4.24e-01 87.8% 63.2%
1075289 2.4.1.5 beta barrels › OB-fold › MOP-like › MOP-like › GlcV_C_terminal 0.61 43.0 4.50e-01 85.1% 85.9%
4961380 4972.1.1.1 beta barrels › barrel domain in CV3147-like proteins › barrel domain in CV3147-like proteins › barrel domain in CV3147-like proteins › DUF917_C 0.60 49.0 4.03e-01 89.2% 84.4%
4966836 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 38.0 4.19e-01 97.3% 85.5%
3480498 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 50.0 4.50e-01 100.0% 90.0%
4962687 4972.1.1.1 beta barrels › barrel domain in CV3147-like proteins › barrel domain in CV3147-like proteins › barrel domain in CV3147-like proteins › DUF917_C 0.59 47.0 4.02e-01 89.2% 87.2%
4985735 2.1.1.17 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.59 50.0 4.72e-01 100.0% 84.2%
5023931 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.57 37.0 3.82e-01 93.2% 70.0%
3560835 2004.1.1.156 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.57 52.0 3.33e-01 100.0% 84.7%
3742641 220.1.1.58 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.57 46.0 4.07e-01 100.0% 60.9%
3280978 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.54 40.0 4.07e-01 83.8% 85.7%
4953780 2004.1.1.159 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.54 45.0 3.01e-01 93.2% 75.4%
5052872 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.53 37.0 3.15e-01 74.3% 88.4%
1088853 3738.1.1.1 a+b complex topology › Major inner capsid protein P1 › Major inner capsid protein P1 › Major inner capsid protein P1 › P1 0.52 37.0 2.21e-01 79.7% 42.7%
4957141 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.51 41.0 4.10e-01 86.5% 85.3%