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NC_000935.1__NP_051003.1__APSE-1_42__00042

Bact-Vir

NC_000935.1__NP_051003.1__APSE-1_42__00042

Identity

Accession:
NC_000935 ↗
Kingdom:
phage

Quality

86.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sendosyvirus› Hamiltonella_phage_APSE-1

TaxID: 2682836

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 173-246
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1kyzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 45.0 4.04e-01 87.8% 63.1%
7uvpA02 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.52 42.0 4.37e-01 91.9% 100.0%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 38.0 3.63e-01 90.5% 64.5%
5gubB01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 38.0 2.83e-01 79.7% 62.3%
1jgsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 40.0 3.30e-01 90.5% 46.4%
5eriA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 40.0 3.24e-01 87.8% 42.5%
5o6uB00 3.30.70.2540 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › CRISPR-associated endoribonuclease Cas6/Csy4 0.50 41.0 3.18e-01 94.6% 44.5%
4mt1A07 3.30.70.1440 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.50 43.0 3.94e-01 98.6% 81.4%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3942751 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.56 41.0 3.52e-01 90.5% 47.5%
3914774 5067.1.1.3 ↗ alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Patched 0.55 46.0 2.67e-01 100.0% 49.5%
3918338 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 36.0 2.91e-01 70.3% 78.7%
4116764 101.1.2.840 ↗ alpha arrays › HTH › HTH › winged helix domain › PF29821 0.53 43.0 3.81e-01 93.2% 73.9%
4440295 101.1.9.5 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.52 44.0 4.21e-01 94.6% 83.5%
5083336 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 34.0 3.92e-01 90.5% 100.0%
3709350 304.31.1.0 ↗ a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase 0.51 43.0 3.31e-01 94.6% 95.6%
4338490 321.1.1.7 ↗ a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GCS2 0.51 40.0 2.69e-01 89.2% 70.4%
4659512 321.1.1.7 ↗ a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GCS2 0.51 40.0 2.69e-01 93.2% 83.5%
3254058 101.1.2.151 ↗ alpha arrays › HTH › HTH › winged helix domain › COR 0.51 35.0 3.41e-01 81.1% 62.4%
4055520 101.1.9.5 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.50 41.0 3.98e-01 93.2% 81.2%
D2 medium residues 11-92
PDB
Domain cluster: rep: OQ927986.1__WIF21984.1__X__00031__D13-77
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09669.16 best Phage_pRha 33.6 6.40e-08 98.8% 63.7%