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NC_001317.1__NP_052285.1__AVT79_gp33__00037

Bact-Vir

NC_001317.1__NP_052285.1__AVT79_gp33__00037

Identity

Accession:
NC_001317 ↗
Kingdom:
phage

Quality

76.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Peduoviridae› Eganvirus› Escherichia_phage_186

TaxID: 2681630

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 24-75
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01258.24 best zf-dskA_traR 42.6 6.70e-11 73.1% 86.1%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ijjB00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.84 70.0 5.11e-01 90.4% 43.8%
2kq9A00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.79 57.0 4.37e-01 76.9% 79.5%
1tjlA00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.78 66.0 4.81e-01 96.2% 40.7%
1e7lA01 3.40.1800.10 Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › His-Me finger endonucleases 0.65 54.0 4.76e-01 98.1% 97.5%
2ljxA00 3.30.240.40 Alpha Beta › 2-Layer Sandwich › CRO Repressor › E6 early regulatory protein 0.63 47.0 4.14e-01 84.6% 78.0%
2d8xA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.59 47.0 4.32e-01 88.5% 68.6%
2kaeA00 3.30.50.10 Alpha Beta › 2-Layer Sandwich › Erythroid Transcription Factor GATA-1; Chain A › Erythroid Transcription Factor GATA-1, subunit A 0.56 39.0 3.90e-01 75.0% 71.4%
3qw4B02 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 40.0 2.70e-01 76.9% 26.6%
3elbA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.55 40.0 2.89e-01 78.8% 57.6%
1z2qA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.54 45.0 3.87e-01 92.3% 66.7%
5b55A01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 45.0 3.06e-01 94.2% 55.8%
1x4wA00 4.10.1110.10 Few Secondary Structures › Irregular › Zf-an1 domain › AN1-like Zinc finger 0.51 40.0 3.76e-01 86.5% 79.1%
1bwpA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.50 44.0 2.91e-01 100.0% 89.6%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4057746 377.1.1.7 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-dskA_traR 0.99 73.0 8.36e-01 76.9% 100.0%
3386557 377.1.1.7 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-dskA_traR 0.89 65.0 7.27e-01 80.8% 100.0%
3964897 377.1.1.7 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-dskA_traR 0.86 64.0 6.88e-01 80.8% 95.3%
4326544 192.10.1.0 ↗ alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain 0.84 65.0 4.80e-01 82.7% 42.4%
4291301 192.10.1.8 ↗ alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain › zf-dskA_traR 0.83 64.0 4.79e-01 82.7% 44.2%
3973966 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.82 60.0 4.72e-01 76.9% 49.0%
4406909 377.1.1.7 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-dskA_traR 0.81 58.0 6.13e-01 84.6% 86.7%
2083461 377.1.1.7 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-dskA_traR 0.80 69.0 6.23e-01 94.2% 70.0%
119208 377.1.1.7 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-dskA_traR 0.80 60.0 4.94e-01 84.6% 46.6%
3304269 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.73 51.0 5.71e-01 73.1% 95.0%
3797752 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.69 51.0 4.57e-01 80.8% 68.0%
3222905 377.1.1.9 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › XPA_N 0.69 45.0 5.16e-01 78.8% 100.0%
3593825 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.67 51.0 4.39e-01 84.6% 54.1%
3498231 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.66 49.0 4.25e-01 82.7% 94.1%
3511728 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.65 43.0 4.61e-01 73.1% 80.0%
5010918 7579.1.1.42 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Hydrolase_4 0.60 50.0 3.03e-01 98.1% 84.8%
3480920 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.55 40.0 3.16e-01 78.8% 42.6%
3599075 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.55 43.0 4.22e-01 84.6% 80.0%
3934265 5073.1.2.9 ↗ alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Copper efflux ATPase transmembrane domain › Cation_ATPase_C 0.51 45.0 2.89e-01 100.0% 86.9%
4354750 3121.1.1.3 ↗ a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA_2 0.51 38.0 3.40e-01 80.8% 70.7%