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NC_001609.1__NP_042033.1__P4p02__00002
Bact-VirNC_001609.1__NP_042033.1__P4p02__00002
Identity
- Accession:
- NC_001609 ↗
- Kingdom:
- phage
Quality
93.6
mean pLDDT
Cluster
View cluster (15 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-241
Domain cluster:
rep: IMGVR_UViG_3300010239_000028-3300010239-Ga0136451_1000008938__D83-314
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14350.12 best | Beta_protein | 102.4 | 5.70e-29 | 97.9% | 70.8% |
CATH (60)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1n7kA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.72 | 59.0 | 5.97e-01 | 99.6% | 86.3% |
| 4ldaB00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.71 | 31.0 | 4.15e-01 | 96.6% | 74.0% |
| 3a9iA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.71 | 61.0 | 5.91e-01 | 99.6% | 80.3% |
| 1fobA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.71 | 67.0 | 5.88e-01 | 99.6% | 88.6% |
| 3w81A02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.71 | 66.0 | 5.73e-01 | 99.6% | 86.2% |
| 6fcxA01 | 3.20.20.220 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.71 | 67.0 | 6.28e-01 | 100.0% | 94.0% |
| 6fnuA00 | 3.20.20.220 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.71 | 67.0 | 6.17e-01 | 100.0% | 91.9% |
| 1b5tA00 | 3.20.20.220 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.71 | 67.0 | 6.32e-01 | 99.6% | 92.4% |
| 4ee9A00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.70 | 66.0 | 5.89e-01 | 100.0% | 85.7% |
| 4w7wA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.70 | 65.0 | 5.93e-01 | 99.6% | 88.8% |
| 1kwgA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.70 | 64.0 | 5.37e-01 | 98.3% | 88.6% |
| 4o1eB00 | 3.20.20.20 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like | 0.69 | 63.0 | 6.06e-01 | 99.6% | 85.4% |
| 5afdA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.69 | 58.0 | 5.34e-01 | 100.0% | 69.3% |
| 3ndoA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.69 | 58.0 | 5.94e-01 | 99.6% | 91.6% |
| 5c54G00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.69 | 59.0 | 5.33e-01 | 100.0% | 68.4% |
| 2eplX02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.69 | 64.0 | 5.79e-01 | 98.3% | 98.1% |
| 2wc7A01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.69 | 64.0 | 5.39e-01 | 100.0% | 88.7% |
| 3kp1A01 | 3.20.20.440 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › D-Lysine 5,6-aminomutase alpha subunit | 0.69 | 64.0 | 5.28e-01 | 100.0% | 72.2% |
| 1f6yA00 | 3.20.20.20 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like | 0.68 | 61.0 | 5.95e-01 | 98.7% | 86.8% |
| 3ianA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.68 | 64.0 | 5.73e-01 | 99.6% | 87.8% |
| 3bleA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.68 | 61.0 | 5.57e-01 | 99.6% | 73.6% |
| 2ckrA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.67 | 63.0 | 5.78e-01 | 100.0% | 83.3% |
| 1v77A00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.67 | 53.0 | 5.71e-01 | 98.7% | 96.0% |
| 3b8iC00 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.67 | 59.0 | 5.62e-01 | 100.0% | 79.1% |
| 3k1dA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.67 | 62.0 | 5.22e-01 | 100.0% | 81.6% |
| 3iv3A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.67 | 62.0 | 5.50e-01 | 98.7% | 94.2% |
| 5z1aA03 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.67 | 63.0 | 5.70e-01 | 100.0% | 81.8% |
| 3fn9A03 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.66 | 62.0 | 5.65e-01 | 100.0% | 83.8% |
| 4bfaA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.65 | 59.0 | 5.84e-01 | 99.6% | 92.2% |
| 3ktcA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.65 | 59.0 | 5.24e-01 | 96.6% | 87.9% |
| 1lt7B00 | 3.20.20.330 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Homocysteine-binding-like domain | 0.65 | 61.0 | 5.48e-01 | 100.0% | 79.4% |
| 1u1jA01 | 3.20.20.210 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.64 | 60.0 | 4.94e-01 | 98.3% | 80.6% |
| 6b6lA03 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.64 | 56.0 | 5.48e-01 | 100.0% | 84.8% |
| 3qyqA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.64 | 60.0 | 5.69e-01 | 98.7% | 87.2% |
| 7pd2B01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.63 | 60.0 | 5.14e-01 | 100.0% | 70.6% |
| 1bf6A00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.63 | 58.0 | 5.46e-01 | 99.6% | 97.9% |
| 6arhA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.63 | 56.0 | 5.14e-01 | 93.2% | 99.7% |
| 6ki3A01 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.63 | 57.0 | 5.35e-01 | 97.9% | 91.2% |
| 6uczB00 | 3.20.20.20 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like | 0.62 | 58.0 | 5.59e-01 | 99.6% | 93.2% |
| 1fcqA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.62 | 58.0 | 5.22e-01 | 99.6% | 90.4% |
| 3r7wA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 41.0 | 4.68e-01 | 85.7% | 87.4% |
| 1j5sA01 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.61 | 57.0 | 4.90e-01 | 99.2% | 78.3% |
| 1z85B02 | 3.40.1280.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain | 0.61 | 29.0 | 3.55e-01 | 100.0% | 69.1% |
| 3b4uA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.60 | 56.0 | 5.23e-01 | 100.0% | 86.1% |
| 6ia6A01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.59 | 53.0 | 5.14e-01 | 95.8% | 90.6% |
| 1srrC00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.59 | 31.0 | 4.19e-01 | 75.5% | 97.5% |
| 2jjmA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.59 | 39.0 | 4.36e-01 | 96.6% | 86.1% |
| 2qq6A02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.59 | 53.0 | 5.14e-01 | 97.9% | 92.9% |
| 1zunB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 44.0 | 4.79e-01 | 89.9% | 92.9% |
| 4gvpA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.57 | 34.0 | 3.68e-01 | 80.2% | 67.5% |
| 1xrsB02 | 3.40.50.280 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain | 0.56 | 33.0 | 3.98e-01 | 99.2% | 85.6% |
| 2hsjD00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.55 | 38.0 | 4.01e-01 | 70.9% | 77.1% |
| 4q9aA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.55 | 40.0 | 4.19e-01 | 100.0% | 80.8% |
| 2ddmB00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.54 | 45.0 | 4.30e-01 | 86.9% | 85.6% |
| 3hynA00 | 3.40.50.11200 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 35.0 | 3.86e-01 | 85.2% | 82.3% |
| 1k6jB01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 40.0 | 4.33e-01 | 97.0% | 93.6% |
| 1tq8A00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.51 | 29.0 | 3.76e-01 | 94.9% | 98.4% |
| 2vptA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.51 | 41.0 | 4.36e-01 | 98.3% | 97.0% |
| 3nywD00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.50 | 41.0 | 4.34e-01 | 100.0% | 96.7% |
| 3k5wA01 | 3.40.50.10260 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › YjeF N-terminal domain | 0.50 | 37.0 | 3.95e-01 | 92.8% | 86.4% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4665730 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.72 | 68.0 | 6.23e-01 | 100.0% | 83.6% |
| 3387206 | 2002.3.1.5 ↗ | a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase › Polysacc_deac_2 | 0.72 | 55.0 | 5.62e-01 | 99.2% | 81.3% |
| 4476423 | 2002.1.1.76 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DeoC | 0.72 | 59.0 | 5.98e-01 | 99.6% | 86.0% |
| 4566567 | 2002.1.1.29 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHDPS | 0.71 | 58.0 | 5.32e-01 | 99.6% | 66.8% |
| 3182429 | 2002.1.1.151 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_53 | 0.71 | 67.0 | 5.73e-01 | 99.6% | 86.3% |
| 4573973 | 2002.1.1.76 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DeoC | 0.71 | 58.0 | 5.99e-01 | 99.6% | 89.7% |
| 4973850 | 2002.1.1.113 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › CdhD | 0.71 | 66.0 | 6.20e-01 | 100.0% | 93.3% |
| 3975323 | 2002.1.1.90 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MTHFR | 0.70 | 66.0 | 6.12e-01 | 99.6% | 86.1% |
| 4970487 | 2002.1.1.113 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › CdhD | 0.70 | 66.0 | 5.61e-01 | 100.0% | 75.9% |
| 3416243 | 2002.1.1.56 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Dus | 0.69 | 60.0 | 5.23e-01 | 91.6% | 88.7% |
| 4977035 | 2002.1.1.36 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Pterin_bind | 0.68 | 64.0 | 6.00e-01 | 100.0% | 87.0% |
| 169414 | 2002.1.1.25 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HMGL-like | 0.68 | 61.0 | 5.57e-01 | 99.6% | 73.6% |
| 3333548 | 2002.1.1.8 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Cellulase | 0.67 | 63.0 | 5.39e-01 | 100.0% | 78.6% |
| 3972237 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.67 | 27.0 | 3.58e-01 | 96.6% | 65.2% |
| 5053011 | 2002.1.1.73 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT | 0.67 | 62.0 | 5.41e-01 | 97.9% | 88.1% |
| 4015972 | 2002.1.1.8 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Cellulase | 0.66 | 60.0 | 5.05e-01 | 98.7% | 92.9% |
| 3727363 | 2002.1.1.276 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PF29664 | 0.65 | 61.0 | 5.81e-01 | 100.0% | 88.8% |
| 4217979 | 2002.5.1.1 ↗ | a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL | 0.64 | 55.0 | 5.51e-01 | 95.4% | 86.9% |
| 5079607 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.64 | 60.0 | 5.81e-01 | 99.6% | 91.2% |
| 5012989 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.64 | 59.0 | 5.69e-01 | 99.6% | 88.3% |
| 4943552 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.63 | 57.0 | 5.43e-01 | 96.2% | 87.3% |
| 4346067 | 2002.1.1.127 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,LIAS_N | 0.63 | 57.0 | 5.13e-01 | 96.2% | 75.3% |
| 5037715 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.63 | 58.0 | 5.40e-01 | 98.3% | 99.0% |
| 5057431 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.63 | 58.0 | 5.54e-01 | 98.7% | 100.0% |
| 4517601 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.63 | 57.0 | 5.17e-01 | 96.2% | 77.4% |
| 3274753 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.62 | 54.0 | 4.55e-01 | 92.8% | 86.0% |
| 3179585 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.61 | 57.0 | 5.58e-01 | 99.2% | 97.6% |
| 4609532 | 2002.1.1.83 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_1 | 0.60 | 56.0 | 4.66e-01 | 99.2% | 77.5% |
| 5068591 | 2002.1.1.118 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › UvdE | 0.60 | 55.0 | 5.13e-01 | 99.2% | 93.0% |
| 4966186 | 2007.15.1.20 ↗ | a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase › PF26508 | 0.59 | 32.0 | 3.61e-01 | 96.6% | 65.7% |
| 4958621 | 2002.1.1.118 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › UvdE | 0.59 | 54.0 | 5.17e-01 | 97.9% | 99.6% |
| 2877622 | 2002.1.1.49 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldolase | 0.58 | 49.0 | 5.06e-01 | 98.3% | 95.9% |
| 3172340 | 2004.1.1.132 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DLIC | 0.56 | 42.0 | 4.19e-01 | 75.5% | 88.2% |
| 4032621 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.56 | 39.0 | 4.22e-01 | 96.6% | 82.5% |
| 3269898 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.55 | 48.0 | 4.52e-01 | 93.2% | 94.2% |
| 4945711 | 2004.1.1.16 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf | 0.55 | 39.0 | 4.45e-01 | 90.7% | 95.0% |
| 3975681 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.55 | 50.0 | 4.75e-01 | 97.9% | 98.2% |
| 3842532 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.54 | 32.0 | 4.07e-01 | 99.2% | 98.6% |
| 4938576 | 2003.6.1.4 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › ADP_PFK_GK | 0.53 | 48.0 | 4.04e-01 | 97.0% | 94.7% |
| 3715988 | 7579.1.1.18 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_2 | 0.53 | 42.0 | 3.74e-01 | 82.7% | 88.1% |
| 5027438 | 2004.1.1.206 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_31 | 0.53 | 48.0 | 4.73e-01 | 99.2% | 98.5% |
| 3753158 | 2007.9.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain | 0.53 | 33.0 | 4.04e-01 | 98.7% | 97.3% |
| 3936259 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.52 | 40.0 | 4.28e-01 | 94.1% | 92.7% |
| 4290247 | 2004.1.1.201 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_26 | 0.52 | 46.0 | 4.62e-01 | 99.2% | 94.6% |
| 3735637 | 2003.1.1.122 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › SDR | 0.52 | 47.0 | 4.60e-01 | 99.6% | 97.0% |
| 3599511 | 2006.1.6.12 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_2 | 0.51 | 39.0 | 3.89e-01 | 99.6% | 73.3% |
| 3593664 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.51 | 29.0 | 3.64e-01 | 96.2% | 92.1% |
D2
high
residues 260-340
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14350.12 best | Beta_protein | 50.8 | 2.80e-13 | 97.5% | 23.4% |
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3a11B01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.63 | 53.0 | 4.68e-01 | 95.1% | 82.4% |
| 2g3kA00 | 1.20.120.1130 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vps28 C-terminal domain | 0.60 | 51.0 | 4.87e-01 | 93.8% | 89.4% |
| 2oocB00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.60 | 49.0 | 4.54e-01 | 93.8% | 70.5% |
| 2hsbA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.59 | 51.0 | 4.42e-01 | 95.1% | 87.3% |
| 2dc0A00 | 3.90.1300.10 | Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain | 0.58 | 40.0 | 2.58e-01 | 74.1% | 71.0% |
| 2vvwA00 | 1.10.437.20 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › dsDNA poxvirus | 0.55 | 48.0 | 3.93e-01 | 96.3% | 97.3% |
| 2zooA02 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.55 | 38.0 | 3.34e-01 | 70.4% | 91.8% |
| 4n06A02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.55 | 41.0 | 2.93e-01 | 81.5% | 35.2% |
| 2nn4A00 | 1.10.287.760 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like | 0.55 | 37.0 | 4.12e-01 | 74.1% | 93.5% |
| 3h0dB02 | 1.10.1200.150 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Transcriptional repressor of class III stress genes, C-terminal domain | 0.55 | 44.0 | 4.45e-01 | 91.4% | 93.8% |
| 1jswA01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.54 | 38.0 | 3.29e-01 | 74.1% | 71.5% |
| 2zxqA06 | 1.20.1270.70 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle | 0.54 | 40.0 | 4.33e-01 | 100.0% | 93.9% |
| 8b0qA01 | 3.30.420.340 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › UvrC, RNAse H endonuclease domain | 0.53 | 43.0 | 3.45e-01 | 91.4% | 81.2% |
| 4didB01 | 1.20.58.450 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cell division control protein 42 homolog | 0.53 | 39.0 | 3.57e-01 | 80.2% | 71.1% |
| 1q1vA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.52 | 34.0 | 3.66e-01 | 75.3% | 77.1% |
| 4rvcA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 42.0 | 3.11e-01 | 91.4% | 45.4% |
| 1eyqA02 | 3.50.70.10 | Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › | 0.52 | 41.0 | 3.29e-01 | 85.2% | 61.6% |
| 1cnzA00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.51 | 44.0 | 2.96e-01 | 100.0% | 43.5% |
| 2dt5B01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 38.0 | 3.98e-01 | 82.7% | 91.8% |
| 2ppqA02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.51 | 36.0 | 2.73e-01 | 74.1% | 74.3% |
| 2n1rA00 | 1.10.150.90 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Immunodeficiency lentiviruses, gag gene matrix protein p17 | 0.51 | 37.0 | 3.13e-01 | 76.5% | 53.0% |
| 2lmgA00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.50 | 38.0 | 3.95e-01 | 82.7% | 100.0% |
| 2hb5A00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.50 | 40.0 | 3.30e-01 | 87.7% | 66.0% |
| 4kkiA02 | 2.170.130.30 | Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › | 0.50 | 41.0 | 3.90e-01 | 96.3% | 93.3% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4011331 | 3651.1.1.0 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain | 0.64 | 55.0 | 4.83e-01 | 95.1% | 73.3% |
| 3983005 | 635.1.1.1 ↗ | alpha arrays › YgfB-like › YgfB-like › YgfB-like › UPF0149 | 0.61 | 52.0 | 4.20e-01 | 100.0% | 86.9% |
| 4976912 | 601.28.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like | 0.61 | 51.0 | 5.08e-01 | 93.8% | 98.8% |
| 54722 | 601.28.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like | 0.60 | 51.0 | 4.88e-01 | 93.8% | 89.4% |
| 4057487 | 101.1.1.16 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_WhiA | 0.60 | 41.0 | 4.00e-01 | 70.4% | 77.8% |
| 3604094 | 180.1.1.1 ↗ | alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 | 0.60 | 52.0 | 4.17e-01 | 98.8% | 66.7% |
| 4927690 | 101.45.1.0 ↗ | alpha arrays › HTH › DNA polymerase II large subunit DP2 helical domain › DNA polymerase II large subunit DP2 helical domain | 0.57 | 39.0 | 3.94e-01 | 71.6% | 71.2% |
| 3238246 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.57 | 40.0 | 3.73e-01 | 76.5% | 70.0% |
| 4020286 | 2004.1.1.189 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_16 | 0.56 | 43.0 | 3.37e-01 | 86.4% | 44.0% |
| 4630813 | 4952.1.1.0 ↗ | alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like | 0.56 | 41.0 | 3.75e-01 | 77.8% | 70.9% |
| 3896767 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.55 | 42.0 | 4.37e-01 | 82.7% | 88.0% |
| 3981750 | 7516.1.1.0 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases | 0.54 | 42.0 | 2.93e-01 | 85.2% | 67.9% |
| 3976109 | 632.7.1.61 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › BREX_BrxC_helical | 0.53 | 44.0 | 4.17e-01 | 100.0% | 90.5% |
| 3515945 | 2002.1.1.152 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_3 | 0.53 | 42.0 | 2.93e-01 | 88.9% | 83.0% |
| 4126373 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.52 | 37.0 | 3.58e-01 | 74.1% | 96.7% |
| 4945528 | 140.1.1.11 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 | 0.52 | 37.0 | 2.89e-01 | 77.8% | 78.5% |
| 3593829 | 3913.1.1.0 ↗ | extended segments › Intraflagellar transport protein 52 C-terminal domain › Intraflagellar transport protein 52 C-terminal domain › Intraflagellar transport protein 52 C-terminal domain | 0.51 | 33.0 | 3.65e-01 | 84.0% | 83.1% |
| 3938579 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.50 | 35.0 | 3.43e-01 | 93.8% | 65.6% |