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NC_001609.1__NP_042038.1__P4p08__00008

Bact-Vir

NC_001609.1__NP_042038.1__P4p08__00008

Identity

Accession:
NC_001609 ↗
Kingdom:
phage

Quality

76.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Enterobacteria_phage_P4

TaxID: 10680

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-111
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3zuaA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.64 40.0 3.69e-01 85.4% 48.9%
3s5wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 37.0 2.50e-01 78.6% 99.8%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4628460 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.85 76.0 7.57e-01 94.2% 92.4%
5017214 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 40.0 5.35e-01 70.9% 89.1%
4478971 4.1.1.174 ↗ beta barrels › SH3 › SH3 › SH3 › DUF951 0.76 41.0 5.15e-01 70.9% 86.2%
3609256 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 41.0 4.55e-01 73.8% 80.0%
3212945 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.62 36.0 4.54e-01 74.8% 100.0%
3719860 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 44.0 4.24e-01 96.1% 67.8%
3518287 4.1.1.347 ↗ beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.59 42.0 4.10e-01 73.8% 66.1%
2884715 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.53 36.0 3.28e-01 71.8% 79.5%
3234035 4.1.1.60 ↗ beta barrels › SH3 › SH3 › SH3 › YccV-like 0.51 41.0 3.94e-01 87.4% 84.2%
3512466 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 42.0 4.01e-01 92.2% 96.8%
4830342 2003.1.2.16 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.50 36.0 3.00e-01 75.7% 94.6%