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NC_001884.1__NP_046645.1__SPBc2p093__00093
Bact-VirNC_001884.1__NP_046645.1__SPBc2p093__00093
Identity
- Accession:
- NC_001884 ↗
- Kingdom:
- phage
Quality
91.1
mean pLDDT
Taxonomy
TaxID: 2932878
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-102
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3volA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.68 | 35.0 | 3.13e-01 | 84.2% | 35.5% |
| 1q48A00 | 3.90.1010.10 | Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › | 0.66 | 40.0 | 3.58e-01 | 78.2% | 45.5% |
| 1ybxA00 | 3.30.1310.10 | Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain | 0.60 | 34.0 | 3.53e-01 | 73.3% | 59.3% |
| 3zpmA00 | 3.15.10.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 | 0.60 | 53.0 | 4.20e-01 | 99.0% | 89.6% |
| 4id2A00 | 2.40.128.510 | Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 | 0.59 | 41.0 | 3.73e-01 | 79.2% | 52.9% |
| 4exrA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 35.0 | 3.99e-01 | 78.2% | 84.5% |
| 4z9cB00 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.57 | 31.0 | 3.04e-01 | 77.2% | 44.3% |
| 1pcfA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.56 | 30.0 | 3.61e-01 | 96.0% | 78.8% |
| 3kf8A00 | 2.40.50.1040 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.56 | 30.0 | 2.41e-01 | 77.2% | 24.2% |
| 4f0jA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.55 | 47.0 | 3.33e-01 | 93.1% | 66.3% |
| 3natA01 | 3.40.50.11250 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Protein of unknown function DUF3013 | 0.54 | 48.0 | 4.27e-01 | 99.0% | 99.3% |
| 2retA00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.54 | 34.0 | 3.64e-01 | 70.3% | 73.8% |
| 6f1uK02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.54 | 47.0 | 4.21e-01 | 99.0% | 74.5% |
| 3vwdA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.53 | 39.0 | 3.21e-01 | 79.2% | 80.1% |
| 3dxpA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 39.0 | 4.09e-01 | 99.0% | 91.4% |
| 2ogjA01 | 2.30.40.10 | Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 | 0.50 | 38.0 | 3.63e-01 | 78.2% | 92.2% |
| 3aa0B02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.50 | 43.0 | 3.78e-01 | 96.0% | 78.7% |
| 6kmoB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.50 | 37.0 | 2.65e-01 | 79.2% | 76.5% |
| 2ltrA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.50 | 41.0 | 4.10e-01 | 93.1% | 87.6% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4946045 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.69 | 40.0 | 4.73e-01 | 81.2% | 82.9% |
| 3659556 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.67 | 31.0 | 4.56e-01 | 82.2% | 100.0% |
| 3414338 | 11.2.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PI3K_C2 | 0.60 | 55.0 | 4.45e-01 | 99.0% | 84.3% |
| 3789797 | 11.2.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PI3K_C2 | 0.60 | 53.0 | 4.37e-01 | 98.0% | 83.2% |
| 3494700 | 314.1.1.3 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d | 0.59 | 47.0 | 3.24e-01 | 85.1% | 51.7% |
| 4964494 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.59 | 32.0 | 3.07e-01 | 83.2% | 43.5% |
| 3446217 | 5.1.3.65 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 | 0.58 | 42.0 | 3.07e-01 | 76.2% | 34.4% |
| 3238606 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.57 | 41.0 | 3.95e-01 | 75.2% | 77.4% |
| 4586503 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.57 | 44.0 | 4.08e-01 | 85.1% | 65.2% |
| 4433752 | 5.1.3.35 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Neuraminidase | 0.55 | 40.0 | 2.98e-01 | 76.2% | 38.2% |
| 151118 | 7579.1.1.6 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 | 0.55 | 47.0 | 3.33e-01 | 93.1% | 66.3% |
| 4212184 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.54 | 38.0 | 2.90e-01 | 74.3% | 72.2% |
| 3729636 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.54 | 42.0 | 3.23e-01 | 84.2% | 78.7% |
| 4510736 | 11.1.1.640 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ZP-N | 0.53 | 37.0 | 3.40e-01 | 70.3% | 77.7% |
| 3264178 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.53 | 40.0 | 3.61e-01 | 100.0% | 57.9% |
| 3797028 | 213.1.1.14 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_16 | 0.52 | 38.0 | 3.22e-01 | 79.2% | 82.7% |
| 3484705 | 220.1.1.61 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C_FAK1 | 0.52 | 36.0 | 3.25e-01 | 71.3% | 67.9% |
| 3388283 | 7503.1.1.0 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain | 0.52 | 38.0 | 3.35e-01 | 78.2% | 78.1% |
| 3171541 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.51 | 41.0 | 3.79e-01 | 87.1% | 93.0% |
| 4944821 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.51 | 29.0 | 3.44e-01 | 78.2% | 90.0% |
| 4071803 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.51 | 43.0 | 3.59e-01 | 97.0% | 73.2% |
| 3600840 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.50 | 37.0 | 3.77e-01 | 79.2% | 87.0% |