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NC_001884.1__NP_046662.1__SPBc2p110__00110
Bact-VirNC_001884.1__NP_046662.1__SPBc2p110__00110
Identity
- Accession:
- NC_001884 ↗
- Kingdom:
- phage
Quality
70.3
mean pLDDT
Taxonomy
TaxID: 2932878
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-64
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1j5uA01 | 3.55.10.10 | Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain | 0.67 | 47.0 | 3.85e-01 | 73.4% | 65.8% |
| 2gaxA00 | 3.40.1490.10 | Alpha Beta › 3-Layer(aba) Sandwich › Bit1 › Bit1 | 0.61 | 42.0 | 3.29e-01 | 70.3% | 81.3% |
| 5lp7E01 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.60 | 40.0 | 2.87e-01 | 70.3% | 87.2% |
| 3pm9A04 | 3.30.70.2740 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 41.0 | 3.71e-01 | 71.9% | 56.3% |
| 4c2mA09 | 3.30.70.2850 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 39.0 | 2.93e-01 | 71.9% | 66.1% |
| 3i9fB00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 39.0 | 2.95e-01 | 71.9% | 33.1% |
| 6ya6A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.56 | 37.0 | 3.31e-01 | 75.0% | 44.9% |
| 4esbA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 39.0 | 3.40e-01 | 76.6% | 58.3% |
| 2pw4A00 | 1.10.3300.10 | Mainly Alpha › Orthogonal Bundle › Jann2411-like fold › Jann2411-like domain | 0.55 | 38.0 | 2.75e-01 | 71.9% | 59.6% |
| 6abqB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 38.0 | 3.26e-01 | 73.4% | 54.7% |
| 6ketA01 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.54 | 34.0 | 2.11e-01 | 78.1% | 12.2% |
| 3c1mA02 | 3.30.2130.10 | Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like | 0.54 | 36.0 | 2.77e-01 | 71.9% | 59.1% |
| 1hqz800 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.53 | 38.0 | 3.08e-01 | 76.6% | 56.1% |
| 3nlcA01 | 3.30.70.2700 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 36.0 | 3.50e-01 | 71.9% | 73.7% |
| 1p5uB00 | 2.60.40.1090 | Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial-type adhesion domain | 0.53 | 37.0 | 2.96e-01 | 76.6% | 56.4% |
| 2m71A00 | 3.30.110.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Translation initiation factor 3 (IF-3), C-terminal domain | 0.53 | 41.0 | 3.52e-01 | 82.8% | 89.8% |
| 2ifxA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 33.0 | 2.99e-01 | 71.9% | 47.7% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4505220 | 327.4.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › YhbC-like, N-terminal domain › YhbC-like, N-terminal domain › RimP_N | 0.74 | 50.0 | 4.29e-01 | 70.3% | 59.0% |
| 3280466 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.69 | 47.0 | 3.38e-01 | 71.9% | 32.1% |
| 3286277 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.68 | 47.0 | 3.43e-01 | 71.9% | 33.9% |
| 3285723 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.67 | 46.0 | 3.41e-01 | 71.9% | 32.6% |
| 3286725 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.63 | 43.0 | 3.16e-01 | 71.9% | 33.0% |
| 3609518 | 101.1.1.491 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › FAZ1_cons | 0.63 | 43.0 | 3.83e-01 | 73.4% | 53.0% |
| 4929803 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.56 | 38.0 | 2.77e-01 | 70.3% | 45.7% |
| 3278046 | 213.1.1.77 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1, Acetyltransf_7 | 0.55 | 41.0 | 2.95e-01 | 82.8% | 77.7% |
| 4020093 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 38.0 | 3.10e-01 | 75.0% | 40.7% |
| 3652752 | 7579.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases | 0.54 | 39.0 | 2.62e-01 | 75.0% | 20.4% |
| 3251050 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.54 | 36.0 | 2.29e-01 | 70.3% | 14.4% |
| 3615178 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 37.0 | 2.73e-01 | 76.6% | 44.9% |
| 3467470 | 2003.1.5.154 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_29, Methyltransf_11 | 0.52 | 38.0 | 2.53e-01 | 79.7% | 23.8% |
| 5062023 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 35.0 | 3.00e-01 | 73.4% | 87.0% |
| 3938271 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.51 | 39.0 | 2.60e-01 | 87.5% | 92.3% |
| 3664080 | 101.1.2.86 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_Nse1 | 0.51 | 39.0 | 3.28e-01 | 82.8% | 65.5% |
| 3184022 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.51 | 35.0 | 2.81e-01 | 71.9% | 93.1% |
| 5028124 | 3110.1.1.0 ↗ | a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain | 0.51 | 34.0 | 2.66e-01 | 70.3% | 33.3% |