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NC_001900.2__NP_046849.1__PBI_D29_32.1__00031

Bact-Vir

NC_001900.2__NP_046849.1__PBI_D29_32.1__00031

Identity

Accession:
NC_001900 ↗
Kingdom:
phage

Quality

94.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-58
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fh5B00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.66 44.0 3.15e-01 71.4% 62.2%
3zoqC00 6.20.250.30 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.65 50.0 5.12e-01 100.0% 92.5%
1mkfA02 2.60.40.1340 Mainly Beta › Sandwich › Immunoglobulin-like › Chemokine-binding protein M3-like 0.64 55.0 3.94e-01 98.2% 45.9%
2v5yA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 51.0 4.28e-01 100.0% 50.0%
1cfbA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 47.0 3.90e-01 100.0% 45.3%
7y8sB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 47.0 4.17e-01 100.0% 56.3%
1rlhA02 3.40.1520.10 Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1634 › Ta1353-like 0.61 51.0 4.27e-01 96.4% 100.0%
1wvqA00 3.40.1520.10 Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1634 › Ta1353-like 0.60 50.0 3.72e-01 100.0% 63.2%
2zewB00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 49.0 3.62e-01 100.0% 34.7%
3icuA01 3.50.30.30 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › 0.59 48.0 3.62e-01 100.0% 95.0%
1wfoA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 45.0 3.79e-01 100.0% 47.1%
1r0uA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 48.0 3.74e-01 100.0% 91.5%
1y6kR01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 43.0 3.75e-01 100.0% 48.0%
2v3sA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 46.0 4.02e-01 96.4% 100.0%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.57 48.0 3.97e-01 98.2% 59.6%
4njcA00 3.10.20.730 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like 0.57 48.0 4.73e-01 98.2% 90.0%
3v6oA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 41.0 3.68e-01 100.0% 51.7%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.56 47.0 4.08e-01 100.0% 63.5%
2mraA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.56 45.0 3.77e-01 100.0% 52.1%
5e55B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 46.0 4.00e-01 100.0% 58.1%
6cc0A01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.55 41.0 3.03e-01 83.9% 38.4%
1vwxS02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 44.0 4.16e-01 100.0% 76.3%
7q61A01 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 44.0 3.67e-01 100.0% 49.5%
1s3rA04 2.60.40.1430 Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 0.54 45.0 3.75e-01 100.0% 57.7%
4do8A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.54 46.0 4.42e-01 100.0% 95.5%
3w1eA03 2.40.10.410 Mainly Beta › Beta Barrel › Thrombin, subunit H › FlgT, C-terminal domain 0.54 46.0 4.01e-01 100.0% 68.5%
5kfzA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.54 43.0 3.56e-01 100.0% 54.5%
4a18X01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 43.0 3.97e-01 100.0% 77.2%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 43.0 3.99e-01 100.0% 75.0%
2avxA00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.52 39.0 2.88e-01 83.9% 29.2%
3hvnA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.52 43.0 3.18e-01 100.0% 47.7%
2qsdA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 44.0 4.20e-01 100.0% 83.6%
3e0jB00 3.90.1030.20 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain 0.52 42.0 3.20e-01 92.9% 79.0%
1m0wA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 42.0 3.50e-01 100.0% 49.1%
4h3wA02 2.60.120.1260 Mainly Beta › Sandwich › Jelly Rolls › 0.52 44.0 3.29e-01 100.0% 40.1%
2ipiA01 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.51 42.0 2.86e-01 94.6% 48.5%
1x0cA01 2.60.350.10 Mainly Beta › Sandwich › Dex49a from penicillium minioluteum complex, domain 1 › Dextranase, N-terminal 0.51 41.0 2.99e-01 92.9% 80.1%
1x9tA02 3.90.1620.10 Alpha Beta › Alpha-Beta Complex › adenovirus 2 penton base, domain 2 › adenovirus 2 penton base, domain 2 0.50 40.0 2.63e-01 91.1% 23.9%
1eu3A01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.50 39.0 3.11e-01 89.3% 85.2%
ECOD (80)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3413652 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.72 55.0 5.39e-01 100.0% 78.3%
3929801 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.72 54.0 4.58e-01 100.0% 48.4%
3399490 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.72 55.0 5.25e-01 100.0% 72.3%
4399538 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.70 63.0 4.99e-01 100.0% 97.3%
3243722 3792.1.1.0 beta sandwiches › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain 0.67 47.0 3.96e-01 98.2% 42.0%
4297401 304.110.1.0 a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like 0.67 56.0 5.08e-01 98.2% 98.8%
4219489 304.6.1.3 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.67 55.0 3.61e-01 98.2% 33.1%
3582833 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.66 52.0 4.26e-01 100.0% 45.5%
3218957 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.64 48.0 3.94e-01 100.0% 41.7%
4028488 224.1.1.0 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like 0.63 46.0 3.62e-01 100.0% 33.6%
3857592 382.1.1.1 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 0.63 52.0 4.63e-01 100.0% 63.3%
3453549 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.63 48.0 3.99e-01 100.0% 43.5%
3312666 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.62 50.0 4.68e-01 100.0% 72.9%
3929359 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.62 53.0 4.39e-01 100.0% 77.1%
3455763 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.62 47.0 3.93e-01 100.0% 45.5%
3929887 221.1.1.87 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N_2 0.61 49.0 3.99e-01 100.0% 46.4%
4019479 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.61 53.0 3.33e-01 100.0% 20.3%
4004704 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.61 45.0 4.82e-01 92.9% 100.0%
3622256 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.61 49.0 3.76e-01 98.2% 38.1%
3484366 284.1.2.1 a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases › OSR1_C 0.60 50.0 4.29e-01 100.0% 99.0%
3517068 3115.1.1.6 a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 0.60 48.0 4.71e-01 98.2% 83.1%
5054197 304.16.1.1 a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE 0.60 49.0 4.51e-01 98.2% 98.8%
3975705 3115.6.1.0 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon 0.60 44.0 4.64e-01 94.6% 92.0%
4175430 1119.1.1.1 a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW 0.59 49.0 3.33e-01 100.0% 24.3%
3994984 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.59 50.0 4.83e-01 100.0% 93.8%
3668699 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.58 49.0 4.44e-01 100.0% 68.8%
4682347 304.6.1.3 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.58 45.0 3.03e-01 92.9% 43.7%
3265857 299.1.1.0 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain 0.58 48.0 4.00e-01 98.2% 50.0%
3483062 221.1.1.116 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_6 0.58 46.0 3.80e-01 100.0% 45.0%
4651815 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.58 51.0 3.57e-01 100.0% 86.7%
4410522 223.1.1.7 a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind 0.57 43.0 3.10e-01 82.1% 29.7%
4942818 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.57 47.0 3.67e-01 100.0% 46.4%
3523661 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.57 41.0 3.14e-01 100.0% 30.0%
4955225 210.1.3.3 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.57 45.0 3.08e-01 100.0% 21.2%
1442393 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.57 47.0 3.93e-01 100.0% 54.1%
2106285 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.57 47.0 3.92e-01 98.2% 55.6%
3396683 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.57 48.0 4.37e-01 100.0% 96.2%
4967222 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.56 47.0 4.64e-01 100.0% 96.7%
4943401 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.56 47.0 4.22e-01 100.0% 71.8%
119284 3115.2.1.1 a+b two layers › GP2-like › GP2 › GP2 › RNA_pol_inhib 0.56 45.0 4.45e-01 100.0% 88.1%
4939739 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.56 47.0 4.70e-01 100.0% 98.3%
3941732 3115.6.1.0 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon 0.56 43.0 4.51e-01 98.2% 100.0%
3514371 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.56 46.0 3.22e-01 100.0% 71.2%
2164964 223.1.1.7 a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind 0.56 41.0 3.02e-01 83.9% 36.6%
4951473 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.55 46.0 4.49e-01 100.0% 90.5%
1883531 11.15.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Perfringolysin O beta sandwich domain › Perfringolysin O beta sandwich domain › Thiol_cytolys_C 0.55 47.0 3.86e-01 100.0% 58.2%
1145963 4012.3.1.1 a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 › Cas9_PI 0.55 45.0 3.85e-01 98.2% 100.0%
5000510 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.55 46.0 4.28e-01 100.0% 76.0%
4996552 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.55 46.0 4.14e-01 100.0% 71.8%
4927303 525.1.1.1 a+b two layers › Urease, gamma-subunit › Urease, gamma-subunit › Urease, gamma-subunit › Urease_gamma 0.55 44.0 3.61e-01 96.4% 90.0%
3965010 3115.4.1.1 a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 › DUF1543 0.55 46.0 4.03e-01 100.0% 86.7%
2527501 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.55 46.0 3.88e-01 100.0% 58.7%
3216210 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.55 44.0 4.56e-01 92.9% 100.0%
4945577 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.55 45.0 4.36e-01 100.0% 87.7%
3258060 4357.1.1.0 beta barrels › WWE domain › WWE domain › WWE domain 0.55 38.0 3.59e-01 75.0% 97.1%
3345090 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.55 45.0 3.79e-01 100.0% 53.7%
5012895 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.55 45.0 4.58e-01 100.0% 100.0%
4160542 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.54 45.0 4.48e-01 100.0% 98.3%
4969863 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.54 45.0 4.21e-01 100.0% 77.3%
4013514 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.54 44.0 3.77e-01 100.0% 55.2%
5074648 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.54 44.0 4.14e-01 100.0% 77.3%
5065436 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.54 44.0 4.29e-01 98.2% 89.1%
223776 3115.4.1.1 a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 › DUF1543 0.54 44.0 4.16e-01 100.0% 77.5%
4937773 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.53 44.0 4.39e-01 100.0% 98.3%
5080205 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.53 42.0 4.35e-01 96.4% 100.0%
5013176 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.53 44.0 4.09e-01 100.0% 97.3%
4867394 3820.1.1.1 a+b complex topology › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain › Cas9_PI 0.53 42.0 3.68e-01 96.4% 100.0%
3966635 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 39.0 2.87e-01 82.1% 28.8%
5067865 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.53 43.0 4.12e-01 100.0% 87.1%
2831852 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.53 43.0 3.72e-01 100.0% 56.4%
2006900 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.53 42.0 3.56e-01 100.0% 50.0%
2512518 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.53 42.0 3.68e-01 100.0% 57.4%
3236998 4004.1.1.0 beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like 0.52 43.0 3.09e-01 100.0% 96.9%
3197773 10.12.1.52 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_8 0.52 41.0 2.71e-01 100.0% 17.7%
3817222 221.1.1.1 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Fer2 0.52 45.0 3.85e-01 96.4% 76.4%
3568886 2492.1.1.29 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › APOBEC4_like 0.52 41.0 2.97e-01 100.0% 43.3%
3656089 210.2.1.1 a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.51 42.0 2.71e-01 100.0% 22.8%
3711130 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.51 41.0 3.05e-01 100.0% 33.0%
4983090 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.51 41.0 3.81e-01 100.0% 77.2%
3722232 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 40.0 3.35e-01 100.0% 47.0%