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NC_002167.1__NP_037707.1__HK97p11__00011
Bact-VirNC_002167.1__NP_037707.1__HK97p11__00011
Identity
- Accession:
- NC_002167 ↗
- Kingdom:
- phage
Quality
81.8
mean pLDDT
Taxonomy
TaxID: 2681617
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-114
Domain cluster:
rep: OM654374.1__UNY40132.1__KLEA5_gp13__00013__D12-107
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06222.18 best | Phage_TAC_1 | 148.1 | 1.60e-43 | 100.0% | 84.5% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ob9A00 | 3.30.2220.20 | Alpha Beta › 2-Layer Sandwich › rbstp2171 › Phage tail assembly chaperone gp13-like | 1.00 | 91.0 | 8.92e-01 | 100.0% | 88.8% |
| 3kluA01 | 3.30.2220.30 | Alpha Beta › 2-Layer Sandwich › rbstp2171 › | 0.64 | 57.0 | 5.62e-01 | 99.0% | 94.5% |
| 3mk7A00 | 1.20.210.10 | Mainly Alpha › Up-down Bundle › Cytochrome C Oxidase; Chain A › Cytochrome c oxidase-like, subunit I domain | 0.60 | 47.0 | 3.07e-01 | 84.3% | 93.3% |
| 5l3wA01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.59 | 37.0 | 4.09e-01 | 83.3% | 78.6% |
| 2qsbA00 | 1.20.1440.50 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like | 0.56 | 32.0 | 3.42e-01 | 76.5% | 63.5% |
| 2q58B00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.54 | 41.0 | 2.97e-01 | 83.3% | 65.0% |
| 1v4eA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.53 | 42.0 | 3.16e-01 | 87.3% | 65.0% |
| 1nh1A01 | 1.10.3290.20 | Mainly Alpha › Orthogonal Bundle › Fic-like fold › | 0.52 | 38.0 | 3.15e-01 | 78.4% | 89.8% |
| 2hfiA00 | 1.20.120.440 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like | 0.52 | 36.0 | 3.38e-01 | 83.3% | 58.5% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 333304 | 6050.1.1.1 ↗ | a+b two layers › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage_TAC_1 | 0.98 | 83.0 | 8.25e-01 | 100.0% | 84.6% |
| 3194587 | 3924.1.1.1 ↗ | alpha complex topology › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Fungal_trans_2 | 0.64 | 46.0 | 3.23e-01 | 73.5% | 36.8% |
| 4229022 | 5038.1.1.1 ↗ | alpha superhelices › Cytochrome c oxidase subunit I-like › Cytochrome c oxidase subunit I-like › Cytochrome c oxidase subunit I-like › COX1 | 0.58 | 51.0 | 3.28e-01 | 98.0% | 72.5% |
| 3724773 | 5059.1.1.4 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › Nuc_sug_transp | 0.55 | 40.0 | 2.83e-01 | 76.5% | 89.9% |
| 4451000 | 3543.1.1.1 ↗ | alpha complex topology › Acid-activated urea channel › Acid-activated urea channel › Acid-activated urea channel › Gpr1_Fun34_YaaH | 0.55 | 40.0 | 3.20e-01 | 76.5% | 97.0% |
| 4968618 | 611.6.1.0 ↗ | alpha bundles › N-cbl like › PT26-6P helical domain › PT26-6P helical domain | 0.54 | 40.0 | 4.08e-01 | 83.3% | 81.6% |
| 3178390 | 373.1.1.0 ↗ | few secondary structure elements › Zn2/Cys6 DNA-binding domain › Zn2/Cys6 DNA-binding domain › Zn2/Cys6 DNA-binding domain | 0.53 | 31.0 | 3.74e-01 | 95.1% | 90.8% |
| 3651298 | 5059.1.1.4 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › Nuc_sug_transp | 0.52 | 38.0 | 2.61e-01 | 76.5% | 64.3% |
| 3811571 | 5059.1.1.34 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA, Nuc_sug_transp | 0.52 | 38.0 | 2.71e-01 | 76.5% | 86.7% |
| 5075298 | 1075.5.1.8 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › Polysacc_synt_3 | 0.51 | 40.0 | 2.96e-01 | 85.3% | 81.4% |
| 3308663 | 601.3.1.11 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › PHD_Oberon | 0.50 | 31.0 | 2.79e-01 | 100.0% | 42.1% |
| 4189329 | 6026.1.1.36 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › AlaE | 0.50 | 39.0 | 3.66e-01 | 85.3% | 79.2% |
D2
medium
residues 118-197
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06223.19 best | Phage_tail_T | 55.7 | 7.70e-15 | 58.8% | 63.0% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2o35A00 | 1.10.3340.10 | Mainly Alpha › Orthogonal Bundle › SMc04008-like fold › SMc04008-like | 0.65 | 33.0 | 3.39e-01 | 81.2% | 50.6% |
| 1i6kA02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.63 | 44.0 | 4.03e-01 | 75.0% | 100.0% |
| 3ccgA00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.63 | 33.0 | 2.47e-01 | 88.7% | 21.2% |
| 5ekdA02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.60 | 43.0 | 3.93e-01 | 76.2% | 100.0% |
| 16vpA00 | 1.10.1290.10 | Mainly Alpha › Orthogonal Bundle › Conserved core of transcriptional regulatory protein vp16 › Alpha trans-inducing (Alpha-TIF) | 0.57 | 40.0 | 2.73e-01 | 75.0% | 30.9% |
| 3r7aB00 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.52 | 38.0 | 2.85e-01 | 80.0% | 83.3% |
| 2xrhA00 | 1.20.120.1430 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HP0721 helical bundle | 0.51 | 29.0 | 2.77e-01 | 80.0% | 43.0% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3748535 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.58 | 48.0 | 3.64e-01 | 88.7% | 60.0% |
| 3497102 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.53 | 41.0 | 2.80e-01 | 85.0% | 56.1% |
| 4987535 | 101.1.4.18 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_31 | 0.52 | 41.0 | 3.59e-01 | 90.0% | 79.2% |
| 3785118 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.51 | 41.0 | 3.24e-01 | 90.0% | 85.1% |