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NC_002371.2__NP_059596.1__P22gp36__00036
Bact-VirNC_002371.2__NP_059596.1__P22gp36__00036
Identity
- Accession:
- NC_002371 ↗
- Kingdom:
- phage
Quality
84.8
mean pLDDT
Taxonomy
TaxID: 2908168
Cluster
View cluster (24 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-125
Domain cluster:
rep: MT006234.1__QIG78055.1__BRUR0010001c01_00024__00024__D3-152
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04404.18 best | ERF | 144.4 | 4.00e-42 | 98.4% | 81.7% |
D2
high
residues 149-204
Domain cluster:
representative
CATH (48)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1sumB01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.82 | 72.0 | 5.86e-01 | 100.0% | 84.1% |
| 5ctrA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.81 | 71.0 | 4.39e-01 | 98.2% | 18.7% |
| 4adnA01 | 1.20.1280.250 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.80 | 65.0 | 5.58e-01 | 87.5% | 64.7% |
| 4dlqA02 | 1.25.40.610 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.79 | 67.0 | 5.64e-01 | 100.0% | 56.8% |
| 1mhyG02 | 1.20.1280.30 | Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2 | 0.77 | 66.0 | 6.09e-01 | 98.2% | 79.5% |
| 4ioeA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.77 | 54.0 | 4.62e-01 | 73.2% | 47.1% |
| 2p4vA01 | 1.10.287.180 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain | 0.77 | 55.0 | 4.98e-01 | 76.8% | 80.3% |
| 1t98A02 | 1.20.58.590 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chromosome partition protein MukF, middle domain | 0.76 | 65.0 | 4.73e-01 | 100.0% | 68.1% |
| 5cwhA01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.76 | 65.0 | 4.73e-01 | 98.2% | 38.5% |
| 2q0oA01 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.76 | 66.0 | 4.71e-01 | 100.0% | 98.2% |
| 4l0rB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.75 | 53.0 | 4.86e-01 | 75.0% | 57.5% |
| 7zm7601 | 1.20.120.1200 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ | 0.75 | 51.0 | 3.64e-01 | 75.0% | 24.0% |
| 1cxzB00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.74 | 52.0 | 4.55e-01 | 75.0% | 50.0% |
| 1rv2D04 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.74 | 51.0 | 4.74e-01 | 71.4% | 100.0% |
| 1lkoA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.74 | 64.0 | 4.79e-01 | 100.0% | 87.6% |
| 1zpyA00 | 6.10.140.1960 | Special › Helix non-globular › Helix Hairpins › | 0.74 | 52.0 | 4.44e-01 | 75.0% | 46.2% |
| 1ydxA02 | 1.10.287.1120 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein | 0.74 | 53.0 | 4.54e-01 | 76.8% | 75.6% |
| 5m9dA00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.74 | 62.0 | 4.71e-01 | 96.4% | 47.1% |
| 1vctA01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.74 | 61.0 | 4.95e-01 | 94.6% | 76.1% |
| 1fioA00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.73 | 63.0 | 4.41e-01 | 100.0% | 51.6% |
| 4iggA01 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.73 | 52.0 | 4.90e-01 | 75.0% | 95.5% |
| 1x4tA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.73 | 51.0 | 5.06e-01 | 76.8% | 70.7% |
| 1i6zA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.71 | 61.0 | 4.68e-01 | 100.0% | 69.6% |
| 1c02A00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.71 | 60.0 | 4.23e-01 | 92.9% | 65.1% |
| 8e9gJ01 | 1.20.120.1200 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ | 0.71 | 49.0 | 3.48e-01 | 76.8% | 24.0% |
| 3a8pA02 | 6.10.140.680 | Special › Helix non-globular › Helix Hairpins › | 0.70 | 48.0 | 3.83e-01 | 71.4% | 60.5% |
| 5ulcX00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.70 | 58.0 | 4.52e-01 | 92.9% | 64.8% |
| 8c4aA01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.69 | 58.0 | 3.45e-01 | 100.0% | 13.8% |
| 2js5A00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.69 | 50.0 | 4.62e-01 | 76.8% | 62.0% |
| 2lw1A00 | 1.10.287.380 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain | 0.69 | 52.0 | 4.52e-01 | 80.4% | 85.9% |
| 4nqwB00 | 1.10.10.1320 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Anti-sigma factor, zinc-finger domain | 0.69 | 58.0 | 5.29e-01 | 98.2% | 71.2% |
| 2pl2A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.68 | 56.0 | 3.91e-01 | 98.2% | 27.3% |
| 2lhrA00 | 1.20.58.1270 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 54.0 | 4.90e-01 | 100.0% | 65.4% |
| 2rkhA02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.68 | 55.0 | 4.97e-01 | 89.3% | 98.7% |
| 1vw4L01 | 3.90.1030.10 | Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 | 0.67 | 51.0 | 3.85e-01 | 82.1% | 51.1% |
| 3ne5B04 | 6.10.140.730 | Special › Helix non-globular › Helix Hairpins › | 0.67 | 52.0 | 5.38e-01 | 87.5% | 94.1% |
| 1yxrA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.67 | 58.0 | 5.33e-01 | 100.0% | 97.3% |
| 4fb2A00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.66 | 56.0 | 3.45e-01 | 100.0% | 74.2% |
| 4ga0A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.66 | 51.0 | 3.94e-01 | 98.2% | 35.0% |
| 1y4cA03 | 1.20.120.660 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain | 0.65 | 56.0 | 4.52e-01 | 100.0% | 68.1% |
| 2pusA04 | 6.10.140.300 | Special › Helix non-globular › Helix Hairpins › | 0.64 | 53.0 | 4.43e-01 | 100.0% | 75.9% |
| 3zssA02 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.63 | 51.0 | 4.54e-01 | 89.3% | 73.4% |
| 2c0kB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.62 | 54.0 | 4.00e-01 | 98.2% | 93.3% |
| 1qrvA00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.61 | 42.0 | 3.83e-01 | 71.4% | 90.4% |
| 3h20A04 | 1.10.1240.50 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.60 | 50.0 | 4.35e-01 | 96.4% | 66.3% |
| 6z0fA02 | 1.25.40.680 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type VII secretion system EssB, C-terminal-like domain | 0.58 | 50.0 | 3.61e-01 | 98.2% | 38.6% |
| 1pu6A01 | 1.10.1670.10 | Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) | 0.52 | 40.0 | 3.52e-01 | 89.3% | 91.5% |
| 1or4B00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.52 | 45.0 | 3.23e-01 | 94.6% | 100.0% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3577145 | 4030.1.1.0 ↗ | alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz | 0.86 | 77.0 | 7.80e-01 | 98.2% | 100.0% |
| 3745605 | 109.4.1.280 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PSD13_N | 0.83 | 71.0 | 4.44e-01 | 96.4% | 18.6% |
| 4992256 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.82 | 66.0 | 5.41e-01 | 87.5% | 81.8% |
| 3208136 | 7022.1.1.1 ↗ | alpha bundles › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › MBOAT | 0.81 | 61.0 | 4.11e-01 | 80.4% | 65.1% |
| 3729160 | 7022.1.1.0 ↗ | alpha bundles › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein | 0.80 | 62.0 | 4.17e-01 | 82.1% | 72.6% |
| 4974770 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.80 | 71.0 | 5.08e-01 | 100.0% | 40.0% |
| 3685937 | 109.4.1.1759 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MBOAT | 0.80 | 61.0 | 3.59e-01 | 82.1% | 44.2% |
| 5060020 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.79 | 56.0 | 5.30e-01 | 73.2% | 64.6% |
| 3474945 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.79 | 69.0 | 4.61e-01 | 98.2% | 47.0% |
| 5048590 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.78 | 56.0 | 4.41e-01 | 75.0% | 38.2% |
| 2643652 | 640.1.1.1 ↗ | alpha arrays › Methane monooxygenase hydrolase gamma subunit-like › Methane monooxygenase hydrolase gamma subunit › Methane monooxygenase hydrolase gamma subunit › MeMO_Hyd_G | 0.78 | 69.0 | 4.92e-01 | 100.0% | 35.1% |
| 3864552 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.78 | 62.0 | 5.16e-01 | 89.3% | 86.0% |
| 3713379 | 109.4.1.22 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N | 0.76 | 66.0 | 4.14e-01 | 100.0% | 18.1% |
| 3894494 | 601.1.1.78 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Oscp1 | 0.76 | 70.0 | 4.87e-01 | 100.0% | 67.3% |
| 3556701 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.76 | 65.0 | 4.78e-01 | 98.2% | 70.3% |
| 4955292 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.76 | 64.0 | 4.90e-01 | 100.0% | 56.8% |
| 5082783 | 3281.1.1.0 ↗ | alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related | 0.75 | 68.0 | 3.89e-01 | 100.0% | 26.8% |
| 3766400 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.74 | 53.0 | 4.22e-01 | 75.0% | 38.2% |
| 3266812 | 3291.1.1.211 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › EMC3_TMCO1 | 0.74 | 53.0 | 3.78e-01 | 75.0% | 26.2% |
| 3940815 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.74 | 65.0 | 5.18e-01 | 100.0% | 84.3% |
| 3384514 | 604.15.1.0 ↗ | alpha bundles › Spectrin repeat-like › Efb C-domain-like › Efb C-domain-like | 0.74 | 62.0 | 5.73e-01 | 96.4% | 76.0% |
| 2814929 | 150.1.1.14 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › EncFtn-like | 0.74 | 53.0 | 5.03e-01 | 76.8% | 79.4% |
| 4179237 | 6028.1.1.0 ↗ | alpha bundles › Ribosome modulation factor › Ribosome modulation factor › Ribosome modulation factor | 0.74 | 64.0 | 6.11e-01 | 98.2% | 93.8% |
| 4274754 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.74 | 65.0 | 4.66e-01 | 98.2% | 49.4% |
| 3592737 | 1134.1.1.0 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain | 0.73 | 62.0 | 6.03e-01 | 100.0% | 93.8% |
| 3932497 | 109.26.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nucleoporin_C | 0.73 | 63.0 | 3.72e-01 | 100.0% | 21.6% |
| 3993765 | 627.1.1.0 ↗ | alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain | 0.71 | 59.0 | 5.30e-01 | 100.0% | 76.5% |
| 3615321 | 109.4.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › 14-3-3 | 0.70 | 60.0 | 3.82e-01 | 98.2% | 20.3% |
| 4488279 | 109.4.1.295 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COP9_hel_rpt | 0.69 | 60.0 | 3.71e-01 | 100.0% | 25.8% |
| 3903825 | 611.3.1.0 ↗ | alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.67 | 56.0 | 4.98e-01 | 98.2% | 64.7% |
| 3507677 | 101.35.1.25 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › PF26215 | 0.66 | 54.0 | 4.62e-01 | 92.9% | 65.6% |
| 3380863 | 2007.2.3.9 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTPlike_phytase | 0.66 | 51.0 | 2.87e-01 | 85.7% | 12.3% |
| 4061821 | 604.9.1.1 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p | 0.66 | 55.0 | 5.01e-01 | 100.0% | 75.0% |
| 3636496 | 7022.1.1.1 ↗ | alpha bundles › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › MBOAT | 0.66 | 53.0 | 3.35e-01 | 100.0% | 23.9% |
| 4410196 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.65 | 54.0 | 3.29e-01 | 96.4% | 13.7% |
| 3807124 | 2004.1.1.430 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, ABC_tran_Xtn | 0.65 | 56.0 | 3.22e-01 | 100.0% | 28.3% |
| 4034377 | 4982.1.1.2 ↗ | alpha arrays › KaiA/RbsU domain-like › KaiA/RbsU domain › KaiA/RbsU domain › RsbU_N | 0.65 | 53.0 | 4.61e-01 | 91.1% | 77.8% |
| 3809531 | 109.4.1.532 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF4704 | 0.63 | 52.0 | 3.71e-01 | 100.0% | 44.0% |
| 3867244 | 4953.1.1.37 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › DUF4603 | 0.59 | 50.0 | 4.50e-01 | 100.0% | 77.1% |