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NC_002484.2__NP_061520.1__D3p023__00023

Bact-Vir

NC_002484.2__NP_061520.1__D3p023__00023

Identity

Accession:
NC_002484 ↗
Kingdom:
phage

Quality

70.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Detrevirus› Pseudomonas_phage_D3

TaxID: 2932880

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-63
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vw4L02 1.10.246.170 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.80 57.0 4.95e-01 96.4% 49.4%
4ofzA01 1.20.58.1800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 53.0 4.25e-01 76.4% 60.2%
2ogiB00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.72 57.0 3.80e-01 94.5% 23.8%
2lpeA01 6.10.140.1120 Special › Helix non-globular › Helix Hairpins › 0.70 51.0 4.61e-01 80.0% 62.8%
1lujB01 1.10.10.490 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Beta-catenin-interacting ICAT 0.69 48.0 4.92e-01 87.3% 77.4%
1ma1A01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.68 54.0 5.12e-01 85.5% 73.4%
3crvA02 1.10.275.30 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › 0.67 48.0 3.83e-01 76.4% 38.9%
2yf4F00 1.10.3420.10 Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain 0.66 49.0 3.63e-01 81.8% 30.8%
2z6vA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 55.0 3.31e-01 100.0% 47.7%
1qd1B02 3.30.70.670 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Formiminotransferase, C-terminal subdomain 0.56 39.0 2.92e-01 72.7% 32.4%
2ymmA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 46.0 4.30e-01 100.0% 79.5%
1p49A02 1.10.287.550 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.55 42.0 4.15e-01 87.3% 98.3%
4f92B10 1.10.3380.10 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › Sec63 N-terminal domain-like domain 0.51 45.0 3.34e-01 100.0% 75.5%
2w02B01 1.10.150.640 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle 0.51 39.0 3.57e-01 83.6% 87.8%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3718035 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.79 58.0 5.47e-01 81.8% 66.2%
3754639 150.5.1.106 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › LIN9_C 0.78 57.0 4.93e-01 78.2% 51.8%
4968589 601.7.1.16 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN_Swt1 0.77 66.0 4.97e-01 100.0% 40.7%
3766229 558.1.1.31 ↗ alpha duplicates or obligate multimers › Lis-homology dimerization domain › Lis-homology dimerization domain › Lis-homology dimerization domain › Synaphin 0.75 53.0 4.91e-01 78.2% 58.6%
3204414 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.75 55.0 3.29e-01 76.4% 11.3%
3713449 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.75 60.0 3.74e-01 89.1% 16.3%
4137277 4336.1.1.1 ↗ alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF 0.74 64.0 5.02e-01 96.4% 46.1%
4211999 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.74 59.0 4.50e-01 89.1% 37.7%
4036490 4082.1.1.0 ↗ alpha duplicates or obligate multimers › Hairy Orange domain › Hairy Orange domain › Hairy Orange domain 0.73 53.0 4.05e-01 76.4% 38.4%
4453306 4336.1.1.1 ↗ alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF 0.72 63.0 4.90e-01 96.4% 47.4%
4989157 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.71 55.0 4.63e-01 96.4% 49.0%
3611632 192.7.1.0 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.70 51.0 4.20e-01 76.4% 44.0%
1159106 536.1.1.1 ↗ alpha arrays › beta-catenin-interacting protein ICAT › beta-catenin-interacting protein ICAT › beta-catenin-interacting protein ICAT › ICAT 0.69 47.0 5.01e-01 85.5% 84.8%
4980797 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.68 57.0 4.29e-01 100.0% 37.3%
1290191 159.1.3.1 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › putative NTP pyrophosphohydrolase Exig_1061 › PRA-PH 0.67 50.0 3.62e-01 83.6% 29.7%
4000148 605.2.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 0.63 55.0 4.57e-01 96.4% 69.5%
4961031 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.63 46.0 4.31e-01 85.5% 62.9%
3493322 2006.1.1.8 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › 5_nucleotid 0.62 51.0 3.29e-01 90.9% 19.4%