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NC_002519.1__NP_064754.1__SIO1p17__00017
Bact-VirNC_002519.1__NP_064754.1__SIO1p17__00017
Identity
- Accession:
- NC_002519 ↗
- Kingdom:
- phage
Quality
82.1
mean pLDDT
Taxonomy
TaxID: 2905867
Cluster
View cluster (69 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 18-158
Domain cluster:
rep: HQ332139.1__AGF91556.1__PRRG_00047__00045__D4-148
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pi2D00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.73 | 38.0 | 4.03e-01 | 100.0% | 56.9% |
| 8aasC01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.71 | 36.0 | 4.14e-01 | 100.0% | 65.7% |
| 1je5A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.70 | 66.0 | 5.99e-01 | 100.0% | 91.7% |
| 4jg2A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.69 | 64.0 | 5.84e-01 | 100.0% | 82.7% |
| 1z9fA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.66 | 40.0 | 4.87e-01 | 100.0% | 94.4% |
| 2cwaA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.65 | 40.0 | 4.55e-01 | 100.0% | 80.7% |
| 2k5vA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.64 | 38.0 | 4.50e-01 | 100.0% | 84.7% |
| 4gs3A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.63 | 39.0 | 4.75e-01 | 100.0% | 96.7% |
| 3k6oA01 | 2.40.50.500 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain | 0.61 | 32.0 | 4.30e-01 | 98.6% | 97.3% |
| 4joiA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.61 | 37.0 | 3.71e-01 | 100.0% | 59.6% |
| 1pfsA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.60 | 35.0 | 4.39e-01 | 97.9% | 100.0% |
| 1v1qA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 41.0 | 4.58e-01 | 100.0% | 90.0% |
| 3qwnD01 | 2.40.50.500 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain | 0.59 | 31.0 | 4.05e-01 | 98.6% | 98.6% |
| 2ja9A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 34.0 | 4.29e-01 | 98.6% | 98.8% |
| 2z4hA02 | 2.40.50.540 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NlpE, C-terminal domain | 0.57 | 34.0 | 4.13e-01 | 100.0% | 94.2% |
| 2wkcB00 | 2.40.50.400 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Lactococcus phage single-stranded DNA binding protein | 0.55 | 34.0 | 4.15e-01 | 100.0% | 97.8% |
| 6lbrA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 49.0 | 4.40e-01 | 100.0% | 80.7% |
| 3mahA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.50 | 26.0 | 3.38e-01 | 95.0% | 95.7% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4323154 | 2.1.1.341 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30208 | 0.73 | 36.0 | 3.93e-01 | 100.0% | 56.5% |
| 3098017 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.71 | 36.0 | 3.97e-01 | 100.0% | 59.3% |
| 4942967 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.71 | 40.0 | 4.16e-01 | 100.0% | 59.2% |
| 5076884 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.70 | 41.0 | 4.10e-01 | 100.0% | 55.9% |
| 5012513 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.70 | 40.0 | 4.07e-01 | 100.0% | 57.8% |
| 4952161 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.69 | 38.0 | 4.72e-01 | 99.3% | 87.1% |
| 5043053 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.69 | 42.0 | 4.81e-01 | 100.0% | 81.0% |
| 4956597 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.69 | 41.0 | 4.24e-01 | 100.0% | 61.5% |
| 235847 | 2.1.1.53 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Enc34_ssDNA-bd | 0.69 | 64.0 | 5.99e-01 | 100.0% | 88.4% |
| 3925395 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.69 | 39.0 | 3.97e-01 | 100.0% | 55.7% |
| 3563077 | 2.1.1.188 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CSDE1 | 0.69 | 41.0 | 5.14e-01 | 100.0% | 98.8% |
| None | — | 0.69 | 41.0 | 3.91e-01 | 100.0% | 49.4% | |
| 5013366 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.68 | 38.0 | 4.08e-01 | 100.0% | 63.3% |
| 3883341 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.66 | 38.0 | 3.92e-01 | 100.0% | 58.5% |
| 3490309 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.66 | 39.0 | 4.00e-01 | 100.0% | 60.7% |
| 4156571 | 2.1.1.52 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Stn1 | 0.64 | 35.0 | 3.44e-01 | 100.0% | 47.1% |
| 4642580 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.62 | 36.0 | 4.09e-01 | 100.0% | 76.2% |
| 4026894 | 2.1.1.117 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DPOA2_OB | 0.62 | 36.0 | 3.77e-01 | 100.0% | 61.5% |
| 3639760 | 2.1.1.52 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Stn1 | 0.61 | 40.0 | 3.65e-01 | 100.0% | 51.1% |
| 4022461 | 2.1.1.52 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Stn1 | 0.61 | 42.0 | 3.69e-01 | 100.0% | 48.3% |
| 3990098 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.61 | 37.0 | 4.16e-01 | 100.0% | 77.3% |
| 3619317 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.60 | 40.0 | 4.02e-01 | 100.0% | 65.5% |
| 3179524 | 2.1.1.107 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RRP40_S1 | 0.59 | 37.0 | 4.35e-01 | 100.0% | 91.6% |
| 3209511 | 2.1.1.219 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_cyt-4 | 0.58 | 35.0 | 4.19e-01 | 100.0% | 89.5% |
| 3428367 | 2.1.1.47 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › BRCA-2_OB3 | 0.55 | 39.0 | 3.78e-01 | 100.0% | 63.8% |
| 4934117 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.55 | 33.0 | 4.08e-01 | 97.9% | 98.8% |
| 3914307 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 38.0 | 4.32e-01 | 98.6% | 98.1% |