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NC_002666.1__NP_076607.1__bIL285p35__00035

Bact-Vir

NC_002666.1__NP_076607.1__bIL285p35__00035

Identity

Accession:
NC_002666 ↗
Kingdom:
phage

Quality

75.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-59
PDB
Domain cluster: representative
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5cbeE00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.70 49.0 4.81e-01 84.5% 67.2%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 49.0 4.76e-01 79.3% 68.2%
1s3aA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.67 48.0 4.20e-01 75.9% 89.4%
3d6wB02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.66 43.0 4.92e-01 81.0% 100.0%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 42.0 3.93e-01 79.3% 52.8%
3vz9B00 3.30.457.50 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25 0.63 49.0 3.97e-01 82.8% 89.3%
4rnyA02 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 52.0 3.94e-01 96.6% 43.5%
1f9qD00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 44.0 4.28e-01 84.5% 68.2%
2re3A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.61 45.0 4.31e-01 81.0% 94.3%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 39.0 4.10e-01 79.3% 77.6%
2r6fA04 1.10.8.280 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › ABC transporter ATPase domain-like 0.60 44.0 3.59e-01 81.0% 77.1%
4i8oA01 3.30.310.240 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Bacterial toxin RNase RnlA/LsoA, N-terminal domain 0.60 43.0 3.80e-01 77.6% 73.0%
6qpwA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 49.0 3.70e-01 94.8% 83.7%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 44.0 3.65e-01 84.5% 45.1%
3citA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.59 54.0 3.90e-01 100.0% 87.7%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 42.0 4.10e-01 84.5% 66.7%
2ky8A00 3.30.890.10 Alpha Beta › 2-Layer Sandwich › Methyl-cpg-binding Protein 2; Chain A › Methyl-cpg-binding Protein 2; Chain A 0.59 43.0 4.09e-01 79.3% 84.3%
1qftB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 39.0 2.86e-01 70.7% 34.3%
2a6hC03 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.59 46.0 3.37e-01 91.4% 98.3%
3h74A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.58 50.0 3.18e-01 93.1% 82.7%
2i00A03 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.58 38.0 3.30e-01 79.3% 41.1%
2fl4A02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 44.0 3.61e-01 81.0% 54.8%
1xezA04 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.58 44.0 3.37e-01 82.8% 54.1%
4jn7A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.58 50.0 3.95e-01 100.0% 47.1%
3n4eA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 51.0 4.18e-01 100.0% 54.8%
4paaA04 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.57 43.0 3.49e-01 82.8% 54.7%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 40.0 3.93e-01 84.5% 65.7%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.56 37.0 3.69e-01 77.6% 63.5%
1ehiA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.56 46.0 3.52e-01 94.8% 52.8%
6ks6Z01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.55 43.0 2.82e-01 86.2% 40.1%
3ec3A02 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 39.0 3.10e-01 74.1% 75.6%
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 42.0 3.90e-01 86.2% 63.3%
3nixB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 49.0 2.94e-01 98.3% 76.5%
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 50.0 3.83e-01 100.0% 90.6%
3buxB03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.55 44.0 3.90e-01 89.7% 73.3%
1zxtA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 39.0 3.90e-01 86.2% 73.8%
2zylA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.54 40.0 3.13e-01 81.0% 37.0%
1vhzA01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.54 43.0 3.15e-01 89.7% 76.4%
6z46V01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.54 40.0 2.81e-01 79.3% 40.7%
6njeA00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.54 48.0 3.02e-01 100.0% 22.2%
2z9iC01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 36.0 3.16e-01 70.7% 90.2%
3cetB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 44.0 3.73e-01 100.0% 95.5%
3zxjA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 45.0 2.91e-01 100.0% 48.7%
1ykdB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.53 44.0 3.20e-01 98.3% 70.6%
1iyxA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 47.0 3.69e-01 100.0% 46.4%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.53 37.0 2.97e-01 77.6% 60.3%
7d8gA01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.53 46.0 3.30e-01 98.3% 55.7%
4dzoA02 3.30.457.60 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.52 37.0 3.37e-01 74.1% 74.0%
7x4pA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.51 44.0 3.28e-01 98.3% 59.2%
4fd0A01 2.60.40.3630 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 41.0 3.77e-01 93.1% 92.4%
4okeA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 38.0 2.92e-01 86.2% 72.5%
5t1dB00 3.10.390.20 Alpha Beta › Roll › SAND domain › Viral glycoprotein L 0.51 41.0 3.56e-01 94.8% 62.6%
1fgyA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 44.0 3.41e-01 96.6% 94.4%
1k32A01 2.120.10.60 Mainly Beta › 6 Propeller › Neuraminidase › Tricorn protease N-terminal domain 0.50 41.0 2.79e-01 100.0% 58.8%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3667744 1.1.1.9 beta barrels › cradle loop barrel › RIFT-related › acid protease › TAXi_C 0.73 44.0 2.83e-01 91.4% 14.5%
3869511 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.72 56.0 4.81e-01 89.7% 52.6%
3774338 292.2.1.6 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › DUF4520 0.71 64.0 5.13e-01 100.0% 60.0%
3933293 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.70 54.0 5.48e-01 94.8% 87.9%
3599237 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.70 61.0 5.31e-01 100.0% 70.0%
4300449 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.67 43.0 4.19e-01 79.3% 58.5%
5022848 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 43.0 4.32e-01 79.3% 65.0%
1032344 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.66 48.0 4.35e-01 84.5% 56.8%
4971094 802.1.1.0 a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.65 50.0 3.85e-01 84.5% 87.4%
5083031 247.1.1.30 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Anti-Pycsar_Apyc1 0.63 49.0 3.28e-01 86.2% 97.5%
3238035 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.63 45.0 4.81e-01 87.9% 90.0%
3942738 295.1.1.29 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › YjeJ 0.63 49.0 3.63e-01 86.2% 87.7%
1815428 3454.1.1.1 beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like › PilP 0.63 46.0 4.00e-01 81.0% 71.6%
3935038 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.61 48.0 4.42e-01 93.1% 65.8%
4961598 2.21.1.0 beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.60 53.0 3.97e-01 100.0% 74.5%
4933497 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 50.0 4.27e-01 100.0% 84.8%
3197934 2485.1.1.35 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › MRP_L53 0.60 41.0 3.41e-01 72.4% 78.1%
3831261 844.1.1.5 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › DUF3527 0.60 52.0 3.52e-01 100.0% 30.2%
3836701 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.59 43.0 3.21e-01 81.0% 30.4%
3879186 4099.1.1.2 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spindle_Spc25 0.59 44.0 3.11e-01 79.3% 51.4%
3268469 247.1.1.23 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2+Lactamase_B_4 0.58 48.0 2.77e-01 100.0% 50.8%
5000042 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.58 46.0 3.20e-01 87.9% 69.3%
4965528 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.58 46.0 3.02e-01 84.5% 26.2%
3879163 247.1.1.31 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_4, Anti-Pycsar_Apyc1 0.58 52.0 2.93e-01 100.0% 42.4%
4029346 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.58 41.0 3.41e-01 74.1% 74.0%
4130525 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.58 50.0 3.00e-01 98.3% 64.7%
3911547 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.57 51.0 4.49e-01 100.0% 74.1%
4280539 109.21.1.8 alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › WD40 0.57 50.0 2.79e-01 100.0% 40.1%
3347210 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 40.0 3.56e-01 81.0% 50.0%
5075725 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 46.0 3.35e-01 93.1% 34.5%
4997916 2484.1.1.124 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 0.57 46.0 3.36e-01 89.7% 83.7%
3859059 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.56 50.0 4.33e-01 100.0% 67.8%
3422528 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 40.0 3.97e-01 79.3% 73.3%
3374669 1.1.1.20 beta barrels › cradle loop barrel › RIFT-related › acid protease › TAXi_C+TAXi_N 0.56 39.0 2.38e-01 72.4% 30.3%
5076798 321.1.1.7 a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GCS2 0.56 50.0 3.00e-01 100.0% 29.2%
4322616 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.56 46.0 3.22e-01 100.0% 64.3%
3179214 2003.1.2.29 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_8 0.55 49.0 2.93e-01 98.3% 89.1%
3325087 1.1.1.28 beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp, TAXi_C, TAXi_N 0.55 45.0 2.79e-01 96.6% 52.7%
3670347 252.1.1.1 a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.55 40.0 3.72e-01 81.0% 79.7%
3260957 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.55 46.0 3.67e-01 100.0% 67.7%
5018058 247.1.1.11 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 0.55 45.0 2.98e-01 93.1% 33.2%
3684267 5.1.10.15 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › RPE65 0.54 43.0 3.34e-01 87.9% 42.3%
4500383 316.1.1.26 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › SMODS 0.54 42.0 2.99e-01 86.2% 89.7%
5062120 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 45.0 3.86e-01 100.0% 65.7%
3912274 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.54 47.0 4.49e-01 100.0% 84.3%
3311849 2485.1.1.35 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › MRP_L53 0.54 44.0 3.54e-01 91.4% 84.3%
3514959 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.53 40.0 2.96e-01 89.7% 84.1%
3226306 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 45.0 3.64e-01 94.8% 97.4%
5039314 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.53 46.0 3.32e-01 94.8% 97.4%
3917795 5.1.4.173 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR75_2nd 0.53 43.0 2.70e-01 93.1% 91.3%
5060170 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.52 42.0 2.71e-01 91.4% 33.7%
4938456 244.2.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain 0.52 41.0 3.72e-01 91.4% 65.1%
3890480 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.52 45.0 4.16e-01 100.0% 85.3%
3561257 252.1.1.1 a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.51 38.0 3.72e-01 86.2% 96.9%
3449961 1.1.1.28 beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp, TAXi_C, TAXi_N 0.51 41.0 2.61e-01 98.3% 99.4%