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NC_002668.1__NP_076697.1__bIL309p02__00002

Bact-Vir

NC_002668.1__NP_076697.1__bIL309p02__00002

Identity

Accession:
NC_002668 ↗
Kingdom:
phage

Quality

80.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sandinevirus› Lactococcus_phage_bIL309

TaxID: 151537

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 49-192
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09851.15 best SHOCT 36.4 4.20e-09 19.4% 100.0%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7t8tA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 49.0 5.17e-01 77.8% 94.7%
3fm8D03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 43.0 4.93e-01 75.7% 96.3%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 39.0 4.78e-01 70.8% 100.0%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.59 35.0 4.09e-01 78.5% 81.1%
3so6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 41.0 4.22e-01 75.0% 95.6%
1h10A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 38.0 4.15e-01 72.2% 93.2%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.53 37.0 4.01e-01 71.5% 86.3%
2nykA01 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.51 26.0 2.66e-01 77.8% 48.0%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4032084 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.68 43.0 5.13e-01 77.1% 95.8%
4202484 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.67 48.0 4.51e-01 77.8% 61.8%
3255028 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.67 58.0 5.43e-01 90.3% 80.6%
3801480 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 47.0 4.57e-01 74.3% 71.6%
4927397 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 45.0 4.33e-01 72.2% 75.8%
4024448 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 47.0 4.79e-01 75.7% 89.3%
3742832 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 44.0 4.07e-01 70.8% 72.2%
4564186 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 44.0 4.76e-01 71.5% 88.0%
3266642 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 42.0 4.13e-01 73.6% 63.9%
3710438 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 43.0 4.76e-01 70.1% 91.3%
3347865 220.1.1.78 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.61 44.0 4.75e-01 74.3% 95.0%
4121439 220.1.1.217 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH, GRAM 0.58 47.0 3.38e-01 88.2% 31.7%
3479575 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 41.0 4.13e-01 72.2% 84.8%
4203238 220.1.1.217 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH, GRAM 0.55 39.0 3.28e-01 80.6% 42.8%
4425288 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 40.0 2.56e-01 75.7% 64.0%
3372166 632.7.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.54 48.0 3.43e-01 97.2% 90.5%
4037682 101.1.1.26 ↗ alpha arrays › HTH › HTH › Three-helical HTH › UPF0122 0.54 32.0 3.80e-01 95.1% 84.0%
None — 0.54 40.0 3.31e-01 78.5% 95.3%
3499345 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.54 32.0 3.99e-01 78.5% 98.8%
4037650 161.1.1.0 ↗ alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA 0.53 39.0 2.49e-01 75.0% 64.0%
3269549 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 37.0 3.67e-01 71.5% 67.7%
3989430 3755.3.1.127 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › NFACT_N 0.53 41.0 4.22e-01 93.1% 83.6%
3348808 632.7.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.53 47.0 3.38e-01 96.5% 89.6%
3408369 284.1.3.4 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK 0.53 27.0 3.67e-01 75.0% 96.0%
3870421 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.50 37.0 3.46e-01 75.0% 78.3%