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NC_003085.1__NP_203414.1__Mx8p01__00001

Bact-Vir

NC_003085.1__NP_203414.1__Mx8p01__00001

Identity

Accession:
NC_003085 ↗
Kingdom:
phage

Quality

68.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Myxoctovirus› Myxococcus_phage_Mx8

TaxID: 49964

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 32-83
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2yevC00 6.10.280.110 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 45.0 4.19e-01 100.0% 50.8%
1ofcX04 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 59.0 4.88e-01 94.2% 51.1%
2ahmG01 6.10.250.2820 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.70 43.0 3.44e-01 71.2% 32.3%
5g5gA02 1.10.150.120 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain 0.70 48.0 4.06e-01 73.1% 51.1%
2w4sA00 1.10.10.1440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PHAX RNA-binding domain 0.70 54.0 4.64e-01 86.5% 55.8%
1b3qA01 1.10.287.560 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Histidine kinase CheA-like, homodimeric domain 0.69 42.0 3.95e-01 78.8% 53.2%
1dp3A00 1.10.10.450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › TraM protein, DNA-binding 0.68 49.0 4.87e-01 90.4% 72.7%
2nscA01 3.30.70.1050 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain 0.64 49.0 4.30e-01 84.6% 55.1%
3lphC00 6.10.140.630 Special › Helix non-globular › Helix Hairpins › 0.63 41.0 3.99e-01 80.8% 60.3%
2h8pC00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.62 46.0 4.55e-01 82.7% 86.0%
1kfdA02 1.20.1060.10 Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 0.61 38.0 3.35e-01 100.0% 46.5%
4gxbA02 1.20.80.60 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.61 43.0 4.08e-01 75.0% 88.7%
2xzmO02 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.60 48.0 4.39e-01 88.5% 75.7%
1ysqA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.59 47.0 3.21e-01 86.5% 36.5%
8b6jF01 1.10.287.20 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain 0.59 37.0 3.43e-01 78.8% 49.3%
1omsA00 3.30.70.1050 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain 0.58 48.0 3.72e-01 92.3% 54.4%
3khkB01 1.20.1260.30 Mainly Alpha › Up-down Bundle › Ferritin › N6 adenine-specific DNA methyltransferase, N-terminal domain 0.56 44.0 3.22e-01 98.1% 29.6%
1wpbG01 1.10.287.680 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.55 44.0 4.40e-01 90.4% 90.7%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3937711 3818.1.1.1 ↗ alpha arrays › PHAX RNA-binding domain › PHAX RNA-binding domain › PHAX RNA-binding domain › PHAX_RNA-bd 0.74 54.0 4.43e-01 78.8% 47.4%
3641564 3818.1.1.1 ↗ alpha arrays › PHAX RNA-binding domain › PHAX RNA-binding domain › PHAX RNA-binding domain › PHAX_RNA-bd 0.73 55.0 4.58e-01 80.8% 51.1%
3497752 101.1.1.67 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_6 0.69 51.0 4.81e-01 92.3% 64.6%
3785168 7094.1.1.2 ↗ alpha bundles › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › LIS_MGM1 0.68 42.0 3.35e-01 84.6% 33.0%
3283254 192.22.1.0 ↗ alpha bundles › Long alpha-hairpin › Ral binding domain of RLIP76 › Ral binding domain of RLIP76 0.64 38.0 3.89e-01 71.2% 60.0%
4406284 152.1.2.1 ↗ alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 0.64 46.0 4.27e-01 78.8% 68.6%
4664482 101.1.1.99 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF4096 0.61 44.0 3.91e-01 98.1% 53.3%
4644045 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.61 50.0 3.98e-01 94.2% 44.8%
4965632 192.7.1.85 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › DUF4349 0.60 42.0 3.86e-01 73.1% 84.6%
4950546 101.1.6.41 ↗ alpha arrays › HTH › HTH › TrpR › DUF4096 0.58 41.0 3.50e-01 98.1% 44.4%
4464715 306.7.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.58 50.0 3.94e-01 100.0% 55.7%
3984673 101.1.1.99 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF4096 0.55 42.0 3.64e-01 90.4% 51.8%
4292698 306.7.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.54 47.0 3.67e-01 98.1% 57.4%
3971895 107.1.1.0 ↗ alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c 0.54 42.0 3.75e-01 90.4% 70.0%
3286637 2484.1.1.124 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 0.53 46.0 3.31e-01 100.0% 61.8%
3353826 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.50 46.0 3.67e-01 100.0% 68.0%