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NC_003085.1__NP_203419.1__Mx8p06__00006
Bact-VirNC_003085.1__NP_203419.1__Mx8p06__00006
Identity
- Accession:
- NC_003085 ↗
- Kingdom:
- phage
Quality
81.8
mean pLDDT
Taxonomy
TaxID: 49964
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-73
Domain cluster:
representative
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ap8A00 | 3.30.760.10 | Alpha Beta › 2-Layer Sandwich › RNA Cap, Translation Initiation Factor Eif4e › RNA Cap, Translation Initiation Factor Eif4e | 0.71 | 58.0 | 4.08e-01 | 88.7% | 47.4% |
| 2v5yA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 51.0 | 4.59e-01 | 91.5% | 60.8% |
| 6rpxA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 47.0 | 4.53e-01 | 90.1% | 68.2% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.63 | 41.0 | 4.21e-01 | 74.6% | 71.2% |
| 1ltlA03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.62 | 37.0 | 4.24e-01 | 71.8% | 85.7% |
| 1y6kR01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 50.0 | 4.50e-01 | 97.2% | 65.7% |
| 2xqyA03 | 2.60.40.3190 | Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain | 0.60 | 44.0 | 3.64e-01 | 97.2% | 42.1% |
| 1mc0A01 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.60 | 41.0 | 3.16e-01 | 74.6% | 31.6% |
| 4f8bA00 | 3.30.1130.10 | Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain | 0.60 | 49.0 | 3.96e-01 | 90.1% | 82.0% |
| 8os3A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 47.0 | 4.33e-01 | 91.5% | 66.3% |
| 4n6mB00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 41.0 | 3.50e-01 | 71.8% | 56.0% |
| 1hq0A00 | 3.60.100.10 | Alpha Beta › 4-Layer Sandwich › Cytotoxic necrotizing factor 1 (CNF1) › Cytotoxic necrotizing factor, Rho-activating domain | 0.60 | 43.0 | 2.92e-01 | 78.9% | 49.2% |
| 4icwA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.59 | 53.0 | 4.35e-01 | 100.0% | 69.2% |
| 1d5rA02 | 2.60.40.1110 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 52.0 | 4.26e-01 | 100.0% | 63.9% |
| 2mraA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.58 | 47.0 | 4.09e-01 | 93.0% | 88.0% |
| 1jb0D00 | 3.30.1470.10 | Alpha Beta › 2-Layer Sandwich › Photosystem 1 Reaction Centre Subunit Ii; Chain: D; › Photosystem I PsaD, reaction center subunit II | 0.58 | 50.0 | 4.06e-01 | 97.2% | 56.5% |
| 1a8rA02 | 3.30.1130.10 | Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain | 0.58 | 43.0 | 3.59e-01 | 83.1% | 78.7% |
| 3lb6D02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 47.0 | 4.29e-01 | 91.5% | 68.5% |
| 2imlA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.57 | 50.0 | 4.34e-01 | 100.0% | 81.4% |
| 3hn5A02 | 2.60.40.2060 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 46.0 | 4.01e-01 | 91.5% | 71.3% |
| 2wacA01 | 2.40.50.90 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.56 | 39.0 | 3.26e-01 | 76.1% | 41.3% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.55 | 44.0 | 3.50e-01 | 94.4% | 43.1% |
| 1whoA00 | 2.60.40.760 | Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain | 0.53 | 42.0 | 3.96e-01 | 100.0% | 70.2% |
| 2kgfA00 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.53 | 42.0 | 3.51e-01 | 93.0% | 94.3% |
| 4m0wA03 | 2.60.120.1680 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 40.0 | 3.30e-01 | 83.1% | 95.6% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.53 | 44.0 | 4.15e-01 | 100.0% | 93.5% |
| 4cvuA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.52 | 44.0 | 3.30e-01 | 100.0% | 87.4% |
| 4msvA01 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 39.0 | 3.22e-01 | 83.1% | 66.4% |
| 4kg8A00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 40.0 | 3.38e-01 | 97.2% | 48.1% |
| 1e25A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.52 | 43.0 | 3.01e-01 | 100.0% | 73.7% |
| 1vq0A01 | 3.55.30.10 | Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain | 0.51 | 44.0 | 3.09e-01 | 95.8% | 86.7% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.51 | 41.0 | 3.82e-01 | 93.0% | 76.6% |
| 2nvmA00 | 3.30.310.110 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like | 0.51 | 32.0 | 2.84e-01 | 100.0% | 42.3% |
| 4r3dA03 | 2.60.120.1680 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 40.0 | 3.27e-01 | 85.9% | 97.8% |
| 3gldA01 | 2.60.40.3050 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 43.0 | 3.54e-01 | 100.0% | 80.4% |
| 2je8A01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.50 | 43.0 | 3.25e-01 | 100.0% | 88.5% |
| 1z2nX02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.50 | 42.0 | 3.61e-01 | 90.1% | 67.0% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5014684 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.70 | 46.0 | 4.98e-01 | 70.4% | 82.8% |
| 4448678 | 4.1.1.307 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26132 | 0.70 | 49.0 | 4.89e-01 | 74.6% | 98.7% |
| 5080205 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.69 | 44.0 | 5.05e-01 | 70.4% | 92.0% |
| 3285401 | 3986.2.1.0 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd | 0.67 | 58.0 | 5.74e-01 | 100.0% | 93.3% |
| 4956579 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.61 | 46.0 | 3.54e-01 | 81.7% | 98.2% |
| 3814645 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.61 | 54.0 | 4.41e-01 | 100.0% | 71.1% |
| 3836543 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.61 | 55.0 | 4.13e-01 | 100.0% | 61.8% |
| 3782867 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.61 | 54.0 | 4.44e-01 | 100.0% | 70.0% |
| 6845 | 223.1.1.23 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 | 0.60 | 41.0 | 3.01e-01 | 74.6% | 26.7% |
| 3502411 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.60 | 53.0 | 4.68e-01 | 100.0% | 86.7% |
| 3719499 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.60 | 53.0 | 4.37e-01 | 100.0% | 70.8% |
| 3841963 | 11.2.1.8 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PTEN_C2 | 0.60 | 52.0 | 3.98e-01 | 100.0% | 66.3% |
| 4609141 | 11.2.1.8 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PTEN_C2 | 0.59 | 52.0 | 4.23e-01 | 100.0% | 65.0% |
| 5018298 | 302.4.1.0 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit | 0.59 | 44.0 | 3.82e-01 | 80.3% | 92.2% |
| 3832054 | 129.1.1.0 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like | 0.59 | 53.0 | 3.20e-01 | 100.0% | 16.8% |
| 3433727 | 1.1.1.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › TAXi_N | 0.57 | 49.0 | 3.58e-01 | 95.8% | 42.1% |
| None | — | 0.57 | 47.0 | 2.81e-01 | 91.5% | 16.7% | |
| 4534120 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.56 | 40.0 | 2.88e-01 | 76.1% | 33.0% |
| 3603767 | 302.4.1.0 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit | 0.56 | 42.0 | 3.75e-01 | 81.7% | 97.1% |
| 4982153 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.56 | 47.0 | 3.29e-01 | 100.0% | 40.4% |
| 4968352 | 302.4.1.0 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit | 0.56 | 37.0 | 3.51e-01 | 73.2% | 56.5% |
| 4987637 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.55 | 46.0 | 2.75e-01 | 91.5% | 17.5% |
| 3959568 | 3702.1.1.0 ↗ | beta complex topology › Penicillin binding protein dimerisation domain › Penicillin binding protein dimerisation domain › Penicillin binding protein dimerisation domain | 0.55 | 38.0 | 2.56e-01 | 70.4% | 54.4% |
| None | — | 0.54 | 40.0 | 2.70e-01 | 78.9% | 46.3% | |
| None | — | 0.54 | 39.0 | 2.65e-01 | 78.9% | 45.6% | |
| 3898135 | 10.2.1.5 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide | 0.53 | 46.0 | 3.39e-01 | 97.2% | 38.9% |
| 3487306 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.52 | 45.0 | 3.56e-01 | 100.0% | 73.5% |
| 4657898 | 206.1.3.3 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › PPDK_N | 0.51 | 41.0 | 2.68e-01 | 90.1% | 96.0% |
| 4024416 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.51 | 40.0 | 3.24e-01 | 91.5% | 42.7% |
| 3240033 | 7525.1.1.1 ↗ | a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 | 0.51 | 41.0 | 2.81e-01 | 91.5% | 49.1% |