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NC_003085.1__NP_203425.1__Mx8p12__00012

Bact-Vir

NC_003085.1__NP_203425.1__Mx8p12__00012

Identity

Accession:
NC_003085 ↗
Kingdom:
phage

Quality

73.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 218-409
PDB
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4a8eA02 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.89 74.0 7.66e-01 100.0% 90.5%
3nkhA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.83 72.0 6.78e-01 88.5% 83.7%
2a3vA02 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.76 66.0 6.41e-01 90.1% 90.5%
3uxuA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.76 58.0 6.39e-01 100.0% 95.6%
1f44A01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.76 66.0 6.60e-01 90.1% 89.2%
1ae9A00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.75 63.0 6.71e-01 97.4% 97.7%
2v6eA03 1.10.443.30 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Telomere resolvase 0.63 54.0 5.11e-01 90.1% 83.6%
1x42A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.58 23.0 3.38e-01 99.0% 80.7%
4h2uD00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.55 23.0 3.46e-01 78.6% 93.6%
3jtgA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 24.0 3.47e-01 98.4% 100.0%
ECOD (75)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5010452 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.90 51.0 6.81e-01 71.9% 98.2%
5016981 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.90 54.0 6.91e-01 74.0% 95.8%
4637388 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.90 65.0 6.91e-01 90.1% 82.4%
3589779 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.89 64.0 7.27e-01 73.4% 97.3%
3954716 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.89 61.0 7.23e-01 74.0% 96.4%
4975762 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.88 54.0 6.74e-01 72.4% 94.4%
4428937 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.88 54.0 6.84e-01 74.0% 98.3%
4940211 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 69.0 7.31e-01 90.1% 90.6%
5030401 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 56.0 6.66e-01 73.4% 91.1%
5028306 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 69.0 7.20e-01 90.1% 86.7%
4936284 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 50.0 6.56e-01 72.9% 96.5%
5054951 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 54.0 6.56e-01 72.4% 91.5%
5002702 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 68.0 6.89e-01 90.1% 81.1%
4183457 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 62.0 7.06e-01 90.1% 95.9%
4659012 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 62.0 7.13e-01 72.9% 97.2%
3588206 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 61.0 6.93e-01 74.0% 92.7%
4380833 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 63.0 6.76e-01 90.1% 86.7%
4992939 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 72.0 7.61e-01 100.0% 98.2%
3588110 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 60.0 7.02e-01 72.4% 97.9%
5003452 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 56.0 6.81e-01 74.0% 98.5%
4966027 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 66.0 6.76e-01 90.1% 82.6%
3957659 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 57.0 6.83e-01 73.4% 97.0%
4947463 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.85 46.0 6.29e-01 71.9% 99.0%
4997941 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 81.0 7.83e-01 100.0% 93.8%
5061203 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 67.0 6.79e-01 90.6% 82.6%
4475168 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 68.0 6.82e-01 90.1% 82.1%
5007182 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.84 61.0 6.77e-01 100.0% 91.6%
4999495 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 73.0 7.57e-01 100.0% 96.7%
3586881 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 60.0 6.83e-01 73.4% 96.0%
4095013 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 56.0 6.67e-01 74.0% 96.3%
4137254 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 60.0 6.64e-01 72.9% 96.1%
3590354 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 55.0 6.61e-01 73.4% 96.3%
5083506 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 66.0 6.81e-01 90.1% 85.9%
5083074 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 59.0 6.65e-01 72.4% 94.0%
3946063 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 74.0 7.41e-01 100.0% 92.3%
3589872 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 58.0 6.52e-01 72.4% 91.3%
4181053 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 69.0 6.84e-01 90.1% 83.5%
4021119 101.1.8.7 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › NDC10_II 0.82 78.0 6.32e-01 100.0% 65.7%
5073434 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 78.0 7.70e-01 100.0% 95.5%
4961948 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.82 50.0 6.40e-01 72.9% 99.2%
4261355 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 55.0 6.40e-01 71.4% 92.9%
4274013 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 59.0 6.66e-01 74.0% 98.0%
5041911 101.1.8.8 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integr_3 0.81 63.0 6.77e-01 100.0% 92.7%
4166118 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 55.0 6.55e-01 74.0% 97.8%
3589594 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 58.0 6.49e-01 73.4% 91.0%
4522024 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 57.0 6.49e-01 72.4% 96.7%
4007467 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 75.0 7.14e-01 100.0% 85.0%
4093657 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 52.0 6.14e-01 72.4% 91.9%
3964227 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 50.0 6.11e-01 72.9% 93.1%
150341 101.1.8.8 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integr_3 0.80 61.0 6.60e-01 100.0% 93.1%
4994277 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 70.0 7.27e-01 100.0% 96.1%
4959043 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 53.0 6.47e-01 71.9% 100.0%
4964439 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 68.0 6.53e-01 90.1% 86.0%
4965169 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.78 67.0 6.54e-01 89.6% 91.4%
3945675 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 54.0 6.25e-01 75.5% 95.0%
4253165 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 52.0 6.03e-01 72.9% 91.4%
4954527 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 75.0 7.13e-01 100.0% 87.7%
5082761 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 52.0 6.32e-01 71.9% 100.0%
4965845 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 65.0 6.62e-01 89.1% 88.4%
2805 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 52.0 6.05e-01 72.4% 93.6%
5076857 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.76 66.0 6.94e-01 99.5% 98.3%
3587645 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.76 53.0 6.31e-01 74.5% 100.0%
5012504 101.1.8.8 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integr_3 0.76 64.0 6.65e-01 100.0% 93.3%
4938259 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.76 53.0 6.10e-01 71.4% 100.0%
4231677 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.75 53.0 6.15e-01 71.9% 95.2%
3291526 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.75 54.0 5.68e-01 73.4% 90.9%
3271483 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.74 64.0 6.48e-01 90.1% 92.6%
5008693 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.74 70.0 6.83e-01 100.0% 93.3%
3964657 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.74 61.0 6.08e-01 89.6% 84.1%
4962166 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.73 64.0 6.57e-01 100.0% 95.1%
4961917 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.71 63.0 6.42e-01 100.0% 93.7%
5008464 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.67 62.0 6.35e-01 99.5% 100.0%
3483506 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.62 44.0 4.89e-01 72.9% 99.4%
4976651 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 22.0 3.47e-01 70.3% 92.9%
3875839 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.51 29.0 3.59e-01 72.9% 91.3%
D2 high residues 505-567
PDB
D3 medium residues 43-95
PDB
Domain cluster: representative
CATH (62)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2a9sB00 3.90.950.20 Alpha Beta › Alpha-Beta Complex › Maf protein › CinA-like 0.77 69.0 4.81e-01 100.0% 37.6%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.75 51.0 5.05e-01 81.1% 67.9%
3l8kA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.73 45.0 3.43e-01 77.4% 27.4%
1gqyB02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.71 61.0 4.03e-01 96.2% 23.5%
1ifqB00 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.70 54.0 4.23e-01 100.0% 37.5%
1s28A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.69 58.0 4.50e-01 100.0% 66.9%
2zylA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.67 51.0 3.77e-01 92.5% 32.6%
1vx7H01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.66 55.0 4.73e-01 92.5% 98.8%
2db2A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.65 54.0 4.63e-01 100.0% 58.5%
3deeA02 3.90.930.50 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.65 54.0 4.21e-01 92.5% 78.9%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 54.0 4.17e-01 100.0% 41.3%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 42.0 3.96e-01 77.4% 54.5%
7q04F01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.64 50.0 3.93e-01 86.8% 41.3%
4jn7A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.64 52.0 4.15e-01 100.0% 42.9%
3ekiA01 3.40.190.180 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Cypl, domain I 0.64 50.0 3.54e-01 86.8% 31.8%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.64 53.0 4.78e-01 94.3% 77.0%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.64 52.0 4.27e-01 94.3% 84.6%
1o97C00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.64 43.0 2.76e-01 83.0% 14.7%
2v79A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 41.0 3.14e-01 94.3% 30.4%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.63 48.0 4.28e-01 90.6% 56.2%
2d42A02 3.10.450.380 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 44.0 4.15e-01 73.6% 66.2%
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 51.0 4.50e-01 90.6% 87.3%
1j5yA02 3.30.1340.20 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › 3H domain 0.63 44.0 3.64e-01 77.4% 96.3%
1j1tA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 49.0 3.31e-01 90.6% 32.5%
2uurA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 51.0 3.48e-01 96.2% 32.9%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 47.0 3.88e-01 84.9% 44.1%
1mzgB00 3.90.1010.10 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.62 48.0 3.46e-01 83.0% 82.5%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.62 52.0 4.24e-01 100.0% 61.5%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.60 50.0 4.22e-01 98.1% 66.7%
1x49A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 49.0 4.52e-01 94.3% 72.9%
5mteA00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.59 44.0 3.24e-01 79.2% 44.5%
1ykdB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.59 48.0 3.47e-01 100.0% 55.1%
3c96A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 49.0 3.56e-01 100.0% 92.3%
3qu1A00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.59 43.0 3.04e-01 79.2% 35.7%
2y1sA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.59 47.0 3.77e-01 88.7% 88.0%
2gdqA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.59 46.0 3.89e-01 96.2% 61.7%
1xksA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 46.0 2.79e-01 100.0% 12.6%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.58 49.0 3.53e-01 98.1% 58.1%
3p34A02 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.58 42.0 3.41e-01 75.5% 72.2%
1lm0A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 42.0 3.49e-01 81.1% 44.6%
2v90C00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.56 42.0 3.64e-01 88.7% 69.9%
1quqB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 47.0 3.77e-01 100.0% 59.6%
1pj5A03 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.55 44.0 3.16e-01 98.1% 45.5%
3a0oA03 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 44.0 2.90e-01 100.0% 89.0%
1eotA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 39.0 3.58e-01 84.9% 55.4%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 40.0 3.77e-01 84.9% 63.6%
3le2A02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.55 37.0 2.89e-01 71.7% 81.7%
1hp7A01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.54 40.0 3.38e-01 81.1% 66.3%
3vz9B00 3.30.457.50 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25 0.54 45.0 3.78e-01 100.0% 67.0%
6hoxA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 45.0 2.98e-01 96.2% 31.0%
1ni7A00 3.90.1010.10 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.54 43.0 3.25e-01 94.3% 75.8%
3ty4B00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.54 42.0 2.62e-01 92.5% 97.2%
2y3aA01 3.10.20.770 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.54 39.0 2.58e-01 83.0% 17.1%
3f4lA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 42.0 2.87e-01 96.2% 95.5%
7jooC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 41.0 3.51e-01 94.3% 91.8%
3mlqH00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 37.0 3.93e-01 88.7% 100.0%
4i8oA01 3.30.310.240 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Bacterial toxin RNase RnlA/LsoA, N-terminal domain 0.52 40.0 3.43e-01 86.8% 64.0%
2fauA01 2.60.40.640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 40.0 2.91e-01 86.8% 70.2%
1c0gA03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.51 35.0 2.95e-01 96.2% 41.3%
2oarB00 1.10.1200.120 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Large-conductance mechanosensitive channel, MscL; domain 1 0.51 46.0 3.40e-01 100.0% 41.6%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.51 38.0 3.04e-01 92.5% 75.7%
3nwsA01 2.40.50.800 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 43.0 3.23e-01 100.0% 70.2%
ECOD (86)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3945142 252.2.1.7 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › PF30395 0.90 79.0 8.10e-01 98.1% 100.0%
4036688 7520.1.1.1 a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like › CinA 0.78 68.0 4.82e-01 100.0% 38.2%
3954708 4325.1.1.9 mixed a+b and a/b › YegP-like › YegP-like › YegP-like › PF26003 0.76 61.0 6.22e-01 92.5% 96.0%
3307236 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.74 64.0 4.97e-01 100.0% 46.7%
3443999 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.72 53.0 4.49e-01 84.9% 46.7%
4322168 2004.1.1.159 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.72 58.0 3.77e-01 96.2% 19.6%
3943930 4325.1.1.0 mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.71 58.0 5.90e-01 96.2% 100.0%
3786015 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.71 50.0 2.74e-01 100.0% 5.5%
5073342 2484.1.1.4 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H 0.69 60.0 4.76e-01 100.0% 46.5%
3490881 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.68 57.0 4.48e-01 100.0% 42.7%
4328576 221.13.1.0 a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain 0.67 57.0 4.77e-01 98.1% 56.8%
3790606 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.67 56.0 4.36e-01 100.0% 41.4%
3255946 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 45.0 3.96e-01 71.7% 52.5%
3915668 330.1.1.19 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_2 0.66 55.0 4.71e-01 100.0% 56.7%
3501861 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.66 56.0 4.61e-01 100.0% 50.5%
3611337 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.66 55.0 4.19e-01 100.0% 37.9%
3405285 394.1.1.0 few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins 0.66 53.0 4.73e-01 94.3% 95.0%
3937515 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.65 54.0 3.33e-01 94.3% 38.5%
185160 3551.1.1.1 alpha arrays › Pfam family PF09836 C-terminal domain › Pfam family PF09836 C-terminal domain › Pfam family PF09836 C-terminal domain › NGO1945_C 0.65 54.0 4.25e-01 92.5% 81.1%
4939488 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.64 52.0 3.31e-01 92.5% 19.3%
869258 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.64 52.0 4.23e-01 100.0% 45.9%
4255589 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.64 51.0 4.33e-01 96.2% 93.0%
4979132 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.64 52.0 4.12e-01 100.0% 43.0%
3971431 241.11.1.0 a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like 0.64 49.0 4.26e-01 84.9% 100.0%
3407322 220.1.1.52 beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C 0.64 45.0 3.74e-01 77.4% 44.0%
3630103 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.64 52.0 4.10e-01 100.0% 47.7%
4982514 304.162.1.0 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain 0.63 55.0 4.88e-01 96.2% 97.3%
4087213 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.63 51.0 4.71e-01 96.2% 68.0%
3661180 2.1.1.223 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28721 0.63 53.0 4.42e-01 98.1% 87.0%
3164555 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 49.0 3.69e-01 96.2% 32.0%
4319921 2.9.1.1 beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB 0.63 51.0 3.05e-01 88.7% 79.7%
3971108 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 51.0 4.47e-01 100.0% 57.8%
6693 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.62 50.0 3.53e-01 92.5% 79.6%
4981192 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 47.0 3.07e-01 90.6% 17.6%
3591459 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.62 51.0 4.36e-01 100.0% 56.5%
3719687 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 47.0 4.23e-01 83.0% 64.0%
2702299 322.1.1.2 a+b two layers › HPr-like › HPr-like › HPr-like › 3H 0.62 44.0 3.60e-01 79.2% 95.5%
4854385 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.62 52.0 4.50e-01 100.0% 71.6%
4028996 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 43.0 3.22e-01 75.5% 33.1%
4945655 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 42.0 3.49e-01 77.4% 38.0%
3657721 2.1.1.223 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28721 0.62 52.0 3.85e-01 98.1% 58.0%
4001313 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.62 52.0 3.69e-01 98.1% 66.9%
3465790 243.3.1.19 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.61 53.0 3.60e-01 100.0% 51.2%
3933293 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.61 43.0 4.24e-01 77.4% 69.0%
3617638 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.61 50.0 4.08e-01 94.3% 49.5%
3253057 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 54.0 3.86e-01 100.0% 48.4%
3258838 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.60 51.0 3.68e-01 100.0% 33.3%
3949336 220.1.1.216 beta barrels › PH domain-like › PH domain-like › PH domain-like › Helicase_IV_N 0.60 49.0 3.91e-01 100.0% 43.6%
5075469 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.60 45.0 4.25e-01 100.0% 66.2%
3238035 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.60 42.0 4.36e-01 77.4% 80.0%
3515139 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 52.0 3.64e-01 100.0% 29.9%
3439990 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.59 47.0 4.06e-01 98.1% 53.3%
4623301 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 48.0 4.06e-01 92.5% 61.1%
4353121 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.59 48.0 4.10e-01 100.0% 56.0%
3500550 220.1.1.16 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF1681 0.59 49.0 3.61e-01 92.5% 73.6%
3924612 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.59 44.0 3.33e-01 84.9% 31.9%
5022848 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 44.0 4.22e-01 100.0% 70.0%
3237267 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 46.0 3.76e-01 98.1% 44.8%
3952995 192.4.1.0 alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.59 46.0 3.90e-01 96.2% 52.9%
4809699 3781.1.1.1 a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › Ribosomal protein L11/L12e N-terminal domain › Ribosomal protein L11/L12e N-terminal domain › Ribosomal_L11_N 0.59 33.0 3.17e-01 94.3% 43.1%
3359808 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 49.0 3.79e-01 98.1% 73.8%
4051688 4263.2.1.1 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.58 44.0 3.98e-01 90.6% 58.7%
3992069 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 51.0 3.50e-01 100.0% 28.9%
4059525 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.57 47.0 4.05e-01 100.0% 92.6%
5078134 2004.1.1.175 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ParA 0.57 50.0 3.31e-01 100.0% 30.8%
3368395 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.57 49.0 3.09e-01 100.0% 38.7%
3715091 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.57 47.0 4.35e-01 100.0% 72.3%
2859147 7091.1.1.1 a+b complex topology › C-terminal domain of DNA repair helicase RadD › C-terminal domain of DNA repair helicase RadD › C-terminal domain of DNA repair helicase RadD › PF29401 0.56 45.0 3.45e-01 100.0% 63.3%
3721277 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.56 46.0 2.90e-01 94.3% 17.2%
3411578 220.1.1.115 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_19 0.55 47.0 3.43e-01 98.1% 34.5%
3422528 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 43.0 4.22e-01 92.5% 80.0%
4320111 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.55 43.0 3.76e-01 100.0% 92.0%
3484274 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 46.0 3.43e-01 96.2% 85.0%
3455792 5.1.4.319 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR11_1st 0.54 42.0 2.65e-01 88.7% 20.3%
4398495 109.21.1.8 alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › WD40 0.54 48.0 2.65e-01 96.2% 20.3%
3226497 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.54 43.0 3.41e-01 90.6% 59.1%
3303184 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.53 46.0 2.79e-01 100.0% 21.5%
3918235 2003.1.1.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.53 45.0 2.79e-01 100.0% 29.8%
4280539 109.21.1.8 alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › WD40 0.53 46.0 2.54e-01 94.3% 23.1%
3693017 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.52 45.0 2.67e-01 96.2% 13.5%
4951965 323.1.1.0 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.52 40.0 2.51e-01 86.8% 71.6%
3265005 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.52 42.0 2.94e-01 100.0% 31.2%
3600035 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 38.0 3.63e-01 83.0% 66.2%
4018977 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 44.0 3.39e-01 100.0% 40.8%
3582308 220.1.1.16 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF1681 0.51 47.0 3.78e-01 100.0% 68.4%
3662757 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.50 45.0 3.02e-01 100.0% 55.1%