←Back to structures

NC_003157.5__NP_438167.1__phiNIH1.1_p55__00055

Bact-Vir

NC_003157.5__NP_438167.1__phiNIH1.1_p55__00055

Identity

Accession:
NC_003157 ↗
Kingdom:
phage

Quality

78.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Aliceevansviridae› Streptococcus_phage_phiNIH1.1

TaxID: 173707

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 39-187
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2wg7A00 1.20.90.10 Mainly Alpha › Up-down Bundle › Phospholipase A2 › Phospholipase A2 domain 0.77 47.0 5.22e-01 73.2% 75.2%
1li5A02 1.20.120.640 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.63 32.0 4.03e-01 97.3% 81.6%
4gmqA00 1.10.8.840 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ribosome-associated complex head domain 0.62 29.0 3.65e-01 88.6% 70.7%
7ed6A01 1.25.40.340 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › DhaL domain 0.61 50.0 4.61e-01 87.2% 92.8%
2qfcA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 40.0 3.29e-01 77.9% 58.1%
1s0pA01 1.25.40.330 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Adenylate cyclase-associated CAP, N-terminal domain 0.51 43.0 4.10e-01 88.6% 88.3%
8f5oD01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 45.0 3.37e-01 98.7% 69.4%
4adnA01 1.20.1280.250 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.50 28.0 3.52e-01 85.9% 94.1%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3669 633.16.1.1 ↗ alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like › MLD 0.65 37.0 4.57e-01 87.2% 86.7%
54312 633.16.1.0 ↗ alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like 0.64 37.0 4.61e-01 87.2% 89.7%
3458511 371.1.1.7 ↗ few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › zf-RVT 0.58 38.0 3.74e-01 86.6% 60.0%
4930380 3861.1.1.1 ↗ alpha bundles › Mitochondrial translocator protein (TSPO) › Mitochondrial translocator protein (TSPO) › Mitochondrial translocator protein (TSPO) › TspO_MBR 0.55 39.0 3.79e-01 88.6% 65.6%
5057191 3861.1.1.1 ↗ alpha bundles › Mitochondrial translocator protein (TSPO) › Mitochondrial translocator protein (TSPO) › Mitochondrial translocator protein (TSPO) › TspO_MBR 0.54 39.0 3.84e-01 88.6% 67.9%
3908662 109.4.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › 14-3-3 0.54 37.0 3.18e-01 70.5% 75.0%
4092983 3861.1.1.1 ↗ alpha bundles › Mitochondrial translocator protein (TSPO) › Mitochondrial translocator protein (TSPO) › Mitochondrial translocator protein (TSPO) › TspO_MBR 0.53 37.0 3.65e-01 89.3% 66.3%
5075066 633.21.1.0 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.52 37.0 4.21e-01 88.6% 99.1%
3652435 601.1.2.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) 0.51 36.0 3.91e-01 86.6% 85.6%
3619920 613.1.1.1 ↗ alpha complex topology › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › tRNA-synt_2c 0.50 38.0 3.50e-01 79.2% 80.5%