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NP_445696.1

Arc-Vir

NC_003214__NP_445696.1__SIFV0031__00031

Identity

Accession:
NC_003214 ↗
Protein ID:
NP_445696.1 ↗
Kingdom:
archaea

Quality

83.0 mean pLDDT

Taxonomy

Zilligvirae› Taleaviricota› Tokiviricetes› Ligamenvirales› Lipothrixviridae› Betalipothrixvirus› Sulfolobus_islandicus_filamentous_virus

TaxID: 176106

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-64
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.78 56.0 5.52e-01 79.4% 72.7%
3k6qA02 3.30.160.620 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.71 52.0 4.64e-01 90.5% 55.1%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.64 56.0 3.54e-01 96.8% 25.5%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.64 53.0 4.71e-01 96.8% 64.4%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 51.0 4.41e-01 92.1% 61.0%
1qw2A00 3.30.1980.10 Alpha Beta › 2-Layer Sandwich › Hypothetical protein Ta1206 fold › Hypothetical protein YunC 0.63 53.0 4.63e-01 98.4% 94.1%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 46.0 4.63e-01 77.8% 85.5%
1e8oA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.62 42.0 4.08e-01 73.0% 74.3%
2psbA00 3.50.90.10 Alpha Beta › 3-Layer(bba) Sandwich › YerB-like fold › YerB-like 0.61 46.0 3.04e-01 82.5% 40.3%
4fvkA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.61 53.0 3.28e-01 96.8% 29.2%
1omoA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.61 51.0 3.94e-01 95.2% 59.1%
1wiiA01 2.20.25.190 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.61 47.0 4.77e-01 82.5% 90.3%
1v58A01 3.10.450.70 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Disulphide bond isomerase, DsbC/G, N-terminal 0.60 44.0 4.25e-01 77.8% 74.6%
7ne4A01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.60 50.0 3.24e-01 96.8% 24.3%
1di2A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 48.0 4.75e-01 90.5% 97.1%
2nugB02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 45.0 4.45e-01 88.9% 95.8%
6eotD01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.60 46.0 2.75e-01 85.7% 20.1%
6vp6A03 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 52.0 3.31e-01 98.4% 25.8%
4chmB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 43.0 3.60e-01 84.1% 67.7%
1k90A02 3.90.1760.10 Alpha Beta › Alpha-Beta Complex › Adenylylcyclase toxin fold › Anthrax toxin, edema factor, central domain 0.58 43.0 3.26e-01 81.0% 33.3%
4m00A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 43.0 2.93e-01 82.5% 69.3%
1y5oA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 44.0 3.69e-01 85.7% 78.3%
1ohfA03 2.60.270.70 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.57 47.0 3.67e-01 93.7% 56.0%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.56 47.0 3.68e-01 95.2% 85.7%
2r1bA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 49.0 3.47e-01 100.0% 48.0%
3b5qA00 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.55 49.0 2.93e-01 100.0% 19.8%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 42.0 4.18e-01 84.1% 84.6%
2qm4A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.53 43.0 3.47e-01 96.8% 68.5%
3w9kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 43.0 3.47e-01 95.2% 47.4%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 45.0 3.71e-01 100.0% 100.0%
2lioA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 41.0 3.28e-01 87.3% 82.4%
5gtqA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.52 43.0 2.83e-01 96.8% 23.5%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 36.0 3.94e-01 74.6% 97.9%
4eqvA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.52 42.0 3.24e-01 100.0% 55.1%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 38.0 3.93e-01 81.0% 89.3%
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 38.0 3.64e-01 81.0% 86.5%
3kf3A02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.51 41.0 3.18e-01 98.4% 54.8%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5032509 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.74 56.0 5.59e-01 85.7% 80.0%
3938605 3131.1.1.1 ↗ a+b two layers › FYR domain › FYR domain › FYR domain › FYRN,FYRC 0.72 58.0 4.47e-01 88.9% 41.4%
5013176 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.71 60.0 5.71e-01 95.2% 84.0%
4969162 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.70 52.0 5.34e-01 85.7% 85.0%
5015133 4100.1.1.9 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › DUF7387 0.70 51.0 5.22e-01 81.0% 83.3%
3545141 5.1.4.254 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_NOL10_N 0.70 52.0 3.16e-01 79.4% 19.5%
5020788 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.70 51.0 5.10e-01 79.4% 76.9%
4940485 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.69 58.0 4.65e-01 93.7% 74.4%
3275844 5.1.4.73 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RAB3GAP2_N 0.68 55.0 3.35e-01 88.9% 19.9%
4992374 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.68 51.0 5.07e-01 81.0% 89.2%
5065441 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 47.0 5.05e-01 71.4% 88.7%
1031811 222.1.1.12 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.67 46.0 3.43e-01 71.4% 61.2%
3833006 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.66 52.0 3.33e-01 85.7% 26.5%
3923314 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.66 46.0 3.07e-01 73.0% 29.4%
3932430 375.1.1.31 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.66 51.0 4.99e-01 84.1% 82.9%
4965851 4100.1.1.9 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › DUF7387 0.65 44.0 4.69e-01 73.0% 81.8%
3844416 5.1.4.229 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_EMC1_N 0.65 54.0 3.29e-01 92.1% 20.5%
3705234 5.1.4.73 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RAB3GAP2_N 0.65 54.0 3.24e-01 96.8% 27.9%
3709124 5.1.5.68 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › RAB3GAP2_N 0.64 51.0 3.03e-01 88.9% 16.0%
3266673 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 52.0 3.28e-01 92.1% 18.2%
3872866 5.1.5.62 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_LRRK2 0.63 51.0 3.20e-01 92.1% 22.5%
3510850 3459.1.1.0 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule 0.63 50.0 4.46e-01 87.3% 87.8%
3905746 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.63 45.0 4.36e-01 76.2% 74.3%
424930 5.1.3.11 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › MRJP 0.62 49.0 3.02e-01 85.7% 27.6%
5032759 9.23.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 0.62 42.0 3.90e-01 71.4% 97.6%
3548894 5.1.4.320 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_LRRK2 0.62 49.0 3.10e-01 90.5% 21.9%
3592335 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 54.0 3.30e-01 95.2% 21.7%
2095 4976.1.1.1 ↗ beta sandwiches › C-terminal domain in YerB-like proteins › C-terminal domain in YerB-like proteins › C-terminal domain in YerB-like proteins › DUF3048_C 0.61 46.0 3.71e-01 82.5% 90.0%
3610987 719.1.1.0 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.61 49.0 3.98e-01 90.5% 70.4%
3929505 11.1.1.53 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON 0.61 51.0 3.88e-01 95.2% 81.3%
3765027 5.1.4.85 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › NOL11_N 0.60 48.0 3.01e-01 90.5% 22.7%
3822639 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.60 50.0 3.13e-01 90.5% 84.1%
5081796 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.60 44.0 3.23e-01 77.8% 30.0%
3616467 5.1.12.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › PERK and Ire1 luminal domains › eIF2A 0.60 51.0 3.07e-01 96.8% 16.5%
3910727 4.1.1.353 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_TNRC18 0.60 45.0 4.50e-01 82.5% 83.1%
3817530 5.1.3.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.60 46.0 3.08e-01 84.1% 27.8%
5049591 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 42.0 4.22e-01 76.2% 95.4%
None — 0.59 50.0 3.06e-01 93.7% 31.1%
3550970 719.1.1.5 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › PF27933 0.59 49.0 4.16e-01 95.2% 78.2%
3272228 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 47.0 3.12e-01 90.5% 28.8%
3166548 220.1.1.20 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.58 46.0 3.68e-01 85.7% 72.0%
3412604 5.1.4.224 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_RFWD3 0.58 51.0 3.21e-01 100.0% 22.7%
3829614 5.1.4.62 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN 0.57 48.0 2.97e-01 98.4% 26.7%
3561707 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.56 39.0 3.42e-01 77.8% 47.0%
3576373 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 45.0 2.84e-01 95.2% 20.8%
3767960 719.1.1.2 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF 0.56 47.0 3.81e-01 96.8% 80.0%
4106226 5.1.4.29 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PD40 0.55 46.0 3.05e-01 96.8% 25.4%
3408556 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.55 38.0 3.28e-01 77.8% 42.7%
3485288 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.55 47.0 3.37e-01 100.0% 45.0%
3267754 719.1.1.2 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF 0.54 42.0 3.51e-01 90.5% 71.2%
3241305 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.54 47.0 3.67e-01 98.4% 86.4%
3213121 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.54 38.0 3.70e-01 82.5% 66.7%
3393360 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.53 38.0 3.19e-01 81.0% 42.6%
3596085 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.53 41.0 3.94e-01 93.7% 91.3%
3835464 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 38.0 3.76e-01 82.5% 71.4%
3313119 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.53 38.0 3.56e-01 81.0% 61.3%
3429682 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 37.0 3.54e-01 76.2% 62.7%
3315100 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 37.0 3.75e-01 82.5% 75.4%
3359784 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.52 37.0 3.71e-01 81.0% 75.4%
3391556 4.1.1.384 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_krimper_1st 0.52 37.0 3.25e-01 82.5% 47.6%
3465976 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 37.0 3.69e-01 82.5% 75.4%
3577505 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 35.0 3.30e-01 77.8% 55.3%
3612184 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 35.0 3.65e-01 76.2% 78.3%
3815480 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 36.0 3.63e-01 82.5% 75.4%
3707347 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 35.0 3.68e-01 76.2% 85.5%