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NC_003309.1__NP_536391.1__phiE125p35__00035
Bact-VirNC_003309.1__NP_536391.1__phiE125p35__00035
Identity
- Accession:
- NC_003309 ↗
- Kingdom:
- phage
Quality
71.2
mean pLDDT
Taxonomy
TaxID: 2883940
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 34-88
Domain cluster:
rep: MT701587.1__QPB08721.1__CPT_Magia_039__00039__D6-50
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2cg5B00 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.66 | 53.0 | 4.94e-01 | 100.0% | 70.4% |
| 1d5rA01 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.63 | 45.0 | 3.16e-01 | 76.4% | 52.3% |
| 5hmpB02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 51.0 | 4.97e-01 | 100.0% | 92.2% |
| 1r8eA02 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.59 | 47.0 | 4.46e-01 | 100.0% | 72.6% |
| 1bc0A03 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.58 | 41.0 | 3.50e-01 | 72.7% | 65.1% |
| 3l4gB03 | 3.30.56.10 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.58 | 46.0 | 4.25e-01 | 90.9% | 79.7% |
| 1fuiA03 | 3.20.14.10 | Alpha Beta › Alpha-Beta Barrel › L-fucose Isomerase; Chain A, domain 3 › L-fucose/L-arabinose isomerase, C-terminal | 0.58 | 39.0 | 2.55e-01 | 70.9% | 79.3% |
| 5d8cA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.57 | 46.0 | 3.68e-01 | 98.2% | 43.7% |
| 3lmmA01 | 3.30.950.30 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Schlafen, AAA domain | 0.55 | 47.0 | 3.47e-01 | 98.2% | 72.8% |
| 2i0zA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.55 | 46.0 | 3.01e-01 | 100.0% | 30.0% |
| 3hh0A01 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.54 | 44.0 | 4.13e-01 | 98.2% | 97.2% |
| 6jgwA01 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.54 | 41.0 | 3.37e-01 | 90.9% | 53.7% |
| 2zhgA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.54 | 43.0 | 3.54e-01 | 98.2% | 52.9% |
| 1vx7G00 | 3.30.1440.10 | Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 | 0.53 | 42.0 | 3.26e-01 | 94.5% | 38.7% |
| 7ewfB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 45.0 | 4.13e-01 | 100.0% | 74.7% |
| 2x3eA01 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.52 | 36.0 | 2.70e-01 | 76.4% | 95.9% |
| 2jmlA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.51 | 41.0 | 3.81e-01 | 100.0% | 84.0% |
| 2xfvA00 | 3.10.260.30 | Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › | 0.51 | 41.0 | 3.48e-01 | 100.0% | 84.3% |
| 3bkhA02 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.51 | 41.0 | 3.03e-01 | 100.0% | 68.7% |
| 1j2nA00 | 1.10.150.220 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › CPI-17 | 0.50 | 36.0 | 3.08e-01 | 80.0% | 73.7% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3714283 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.72 | 62.0 | 4.77e-01 | 100.0% | 56.9% |
| 3960323 | 132.1.1.1 ↗ | alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding | 0.63 | 46.0 | 4.14e-01 | 80.0% | 87.3% |
| 4014074 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 48.0 | 4.89e-01 | 92.7% | 92.7% |
| 4090636 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.60 | 47.0 | 4.47e-01 | 98.2% | 72.9% |
| 4051681 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.60 | 47.0 | 3.70e-01 | 98.2% | 37.8% |
| 3796539 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.60 | 40.0 | 4.41e-01 | 70.9% | 86.7% |
| 4022449 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 50.0 | 3.66e-01 | 100.0% | 47.6% |
| 5031484 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.59 | 49.0 | 4.17e-01 | 90.9% | 75.6% |
| 3618386 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.59 | 41.0 | 4.43e-01 | 74.5% | 86.7% |
| 3954861 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.59 | 47.0 | 4.70e-01 | 98.2% | 96.4% |
| 3397032 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.58 | 45.0 | 4.16e-01 | 100.0% | 65.3% |
| 3291393 | 101.1.9.82 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 | 0.57 | 47.0 | 3.89e-01 | 100.0% | 61.7% |
| 4668740 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.57 | 45.0 | 3.84e-01 | 100.0% | 50.5% |
| 5053673 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.57 | 48.0 | 4.61e-01 | 100.0% | 84.6% |
| 3198858 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.57 | 41.0 | 3.81e-01 | 76.4% | 61.4% |
| 3281073 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.57 | 46.0 | 3.90e-01 | 98.2% | 66.7% |
| 2325046 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.56 | 45.0 | 3.69e-01 | 98.2% | 67.5% |
| 5023590 | 873.1.1.1 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R | 0.56 | 41.0 | 3.15e-01 | 80.0% | 54.1% |
| 3587879 | 101.1.9.36 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR | 0.56 | 46.0 | 3.83e-01 | 100.0% | 62.7% |
| 3409979 | 377.1.1.18 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-AD | 0.56 | 43.0 | 3.81e-01 | 100.0% | 56.5% |
| 3281621 | 101.1.9.16 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 | 0.56 | 45.0 | 4.51e-01 | 100.0% | 96.4% |
| 4060121 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.56 | 45.0 | 4.50e-01 | 100.0% | 95.0% |
| 5070167 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.56 | 41.0 | 4.12e-01 | 78.2% | 78.2% |
| 4034325 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.56 | 45.0 | 3.66e-01 | 100.0% | 56.8% |
| 3282573 | 101.1.9.82 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 | 0.56 | 45.0 | 3.65e-01 | 100.0% | 55.2% |
| 4197446 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.55 | 44.0 | 3.54e-01 | 100.0% | 48.9% |
| 3651806 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.55 | 41.0 | 3.71e-01 | 83.6% | 75.0% |
| 3908865 | 101.1.2.536 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc3_2 | 0.55 | 40.0 | 4.03e-01 | 76.4% | 78.2% |
| 4190132 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.55 | 38.0 | 3.94e-01 | 72.7% | 80.0% |
| 3428283 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.55 | 40.0 | 3.96e-01 | 78.2% | 75.0% |
| 5064906 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.55 | 43.0 | 4.36e-01 | 100.0% | 96.4% |
| 3387245 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.55 | 44.0 | 3.49e-01 | 98.2% | 40.7% |
| 5083383 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 41.0 | 4.01e-01 | 81.8% | 78.3% |
| 3243611 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.54 | 39.0 | 4.11e-01 | 76.4% | 86.0% |
| 3884711 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.54 | 42.0 | 3.97e-01 | 81.8% | 70.8% |
| 3530959 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.54 | 45.0 | 3.55e-01 | 100.0% | 44.2% |
| 3404928 | 377.1.1.18 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-AD | 0.53 | 41.0 | 3.72e-01 | 100.0% | 61.3% |
| 3909922 | 101.1.1.12 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 | 0.53 | 40.0 | 4.19e-01 | 81.8% | 92.0% |
| 3765475 | 101.1.2.69 ↗ | alpha arrays › HTH › HTH › winged helix domain › La | 0.53 | 41.0 | 3.51e-01 | 90.9% | 61.0% |
| 4604249 | 3018.1.1.1 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS | 0.53 | 39.0 | 3.43e-01 | 83.6% | 77.8% |
| 5007660 | 101.1.1.187 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_33 | 0.53 | 40.0 | 3.79e-01 | 81.8% | 83.1% |
| 4529661 | 101.1.2.122 ↗ | alpha arrays › HTH › HTH › winged helix domain › CSN8_PSD8_EIF3K | 0.52 | 40.0 | 3.98e-01 | 98.2% | 85.0% |
| 4974340 | 101.1.9.16 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 | 0.51 | 41.0 | 4.14e-01 | 98.2% | 98.2% |
| 5052974 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 39.0 | 3.73e-01 | 94.5% | 77.3% |
| 388408 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.51 | 41.0 | 3.40e-01 | 100.0% | 59.2% |
| 3885761 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 35.0 | 3.30e-01 | 76.4% | 68.0% |
| 4622747 | 2484.1.1.20 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 | 0.50 | 42.0 | 2.65e-01 | 100.0% | 40.9% |