←Back to structures
NC_003313.1__NP_536667.1__K139p40__00040
Bact-VirNC_003313.1__NP_536667.1__K139p40__00040
Identity
- Accession:
- NC_003313 ↗
- Kingdom:
- phage
Quality
86.3
mean pLDDT
Taxonomy
TaxID: 2905721
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-144
Domain cluster:
rep: ON615601.1__UTS51982.1__X__00034__D5-121
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12571.14 best | Phage_tail_fib | 44.2 | 2.70e-11 | 100.0% | 88.0% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3x0dA02 | 2.70.160.11 | Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 | 0.61 | 49.0 | 4.59e-01 | 86.6% | 96.0% |
| 3blcA00 | 2.70.98.90 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.51 | 41.0 | 3.29e-01 | 84.5% | 80.4% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4928608 | 3899.1.1.0 ↗ | beta complex topology › Baseplate structural protein gp8 › Baseplate structural protein gp8 › Baseplate structural protein gp8 | 0.84 | 68.0 | 6.52e-01 | 88.0% | 74.8% |
| 4932865 | 3899.1.1.0 ↗ | beta complex topology › Baseplate structural protein gp8 › Baseplate structural protein gp8 › Baseplate structural protein gp8 | 0.81 | 68.0 | 6.89e-01 | 87.3% | 100.0% |
| 4952678 | 3698.1.1.0 ↗ | beta sandwiches › Arginine methyltransferase oligomerization subdomain › Arginine methyltransferase oligomerization subdomain › Arginine methyltransferase oligomerization subdomain | 0.65 | 48.0 | 5.14e-01 | 76.1% | 95.0% |
| 3239092 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.54 | 46.0 | 4.47e-01 | 97.2% | 85.8% |
| 3971194 | 11.1.1.1361 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF2914, DUF5924 | 0.53 | 37.0 | 4.03e-01 | 72.5% | 100.0% |
| 4545116 | 12.3.1.24 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas | 0.52 | 40.0 | 3.23e-01 | 81.0% | 81.5% |
| 224649 | 70.2.1.1 ↗ | beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase | 0.52 | 33.0 | 3.38e-01 | 76.8% | 63.6% |
| 4276998 | 12.3.1.24 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas | 0.51 | 39.0 | 3.19e-01 | 81.7% | 80.0% |
| 4955277 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 37.0 | 4.06e-01 | 77.5% | 93.9% |
| 4385045 | 11.1.1.987 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF30412 | 0.50 | 35.0 | 3.93e-01 | 71.8% | 100.0% |
D2
high
residues 148-270
Domain cluster:
rep: DQ114220.1__AAZ93672.1__X__00037__D153-272
D3
high
residues 327-471
Domain cluster:
rep: NC_007149.1__YP_249596.1__VVP4_p28__00028__D493-632
D4
high
residues 477-564_610-618
Domain cluster:
rep: MN988556.1__QIG76642.1__EVC28_018__00018__D8-93
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2l3rA02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 32.0 | 3.56e-01 | 93.8% | 67.1% |
| 3g0kA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 39.0 | 3.56e-01 | 82.5% | 56.2% |
| 1jnrB02 | 6.20.260.10 | Special › Other non-globular › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Adenylylsulphate reductase, beta subunit, C-terminal domain | 0.54 | 25.0 | 2.68e-01 | 76.3% | 47.0% |
| 3u1wA02 | 3.10.450.360 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 29.0 | 3.39e-01 | 72.2% | 75.8% |
| 3c7fA02 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.53 | 38.0 | 2.64e-01 | 75.3% | 44.1% |
| 4fh3A02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.52 | 40.0 | 3.72e-01 | 83.5% | 91.2% |
| 4exrA01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 31.0 | 3.30e-01 | 74.2% | 69.1% |
| 6iw6A02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.51 | 39.0 | 3.76e-01 | 80.4% | 97.2% |
| 2eyqA05 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.51 | 26.0 | 3.16e-01 | 95.9% | 78.0% |
| 3lygA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 39.0 | 3.65e-01 | 96.9% | 67.5% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5043697 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 32.0 | 3.73e-01 | 75.3% | 67.7% |
| 1933904 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.64 | 28.0 | 3.99e-01 | 74.2% | 100.0% |
| 3626321 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.61 | 31.0 | 3.93e-01 | 78.4% | 85.5% |
| 4941649 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.57 | 32.0 | 3.23e-01 | 70.1% | 53.7% |
| 4089169 | 1170.1.1.0 ↗ | beta barrels › IL8-related › IL8-related › IL8 | 0.56 | 31.0 | 3.47e-01 | 91.8% | 68.0% |
| 5074133 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.55 | 38.0 | 2.89e-01 | 73.2% | 100.0% |
| 3981113 | 283.2.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 | 0.54 | 39.0 | 3.74e-01 | 75.3% | 99.1% |
| 3960836 | 267.1.1.0 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain | 0.53 | 39.0 | 3.18e-01 | 79.4% | 55.9% |
| 4599589 | 5.1.2.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_43 | 0.51 | 43.0 | 3.05e-01 | 97.9% | 74.6% |
| 3166240 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 29.0 | 3.52e-01 | 99.0% | 90.0% |
| 5039971 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.50 | 34.0 | 3.34e-01 | 90.7% | 63.8% |
| 3682149 | 10.13.1.0 ↗ | beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A | 0.50 | 34.0 | 3.17e-01 | 95.9% | 54.4% |
| 5045707 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.50 | 33.0 | 3.62e-01 | 74.2% | 85.3% |