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NC_003315.1__NP_536834.1__HP2p29__00029

Bact-Vir

NC_003315.1__NP_536834.1__HP2p29__00029

Identity

Accession:
NC_003315 ↗
Kingdom:
phage

Quality

60.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Peduoviridae› Hpunavirus› Haemophilus_phage_HP2

TaxID: 2932882

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 196-327
PDB
Domain cluster: rep: JQ066768.1__AFA44858.1__RcapNL_00018__00018__D87-256
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10145.15 best PhageMin_Tail 61.9 1.10e-16 68.9% 48.8%
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2mw8A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 31.0 4.15e-01 80.3% 86.6%
3ed5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.59 37.0 4.45e-01 84.1% 98.8%
1ek9A00 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.59 41.0 2.90e-01 72.0% 72.0%
3rrkA02 1.20.1460.20 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › 0.56 31.0 2.94e-01 84.8% 43.2%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.53 32.0 3.82e-01 76.5% 89.8%
1wolA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.51 28.0 2.97e-01 75.8% 54.9%
3qo8A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.51 26.0 2.90e-01 85.6% 59.4%
1xg7B01 1.10.1670.10 Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 0.51 27.0 3.12e-01 80.3% 69.8%
6ks6Z01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.50 40.0 3.23e-01 85.6% 43.5%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4030882 159.1.2.6 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail 0.81 75.0 6.36e-01 100.0% 65.7%
4937972 2004.1.1.30 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.58 45.0 3.58e-01 81.8% 88.1%
3197864 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.57 30.0 3.37e-01 86.4% 65.0%
3911818 3832.1.1.1 ↗ alpha bundles › Tumor necrosis factor alpha-induced protein 8-like protein 2 › Tumor necrosis factor alpha-induced protein 8-like protein 2 › Tumor necrosis factor alpha-induced protein 8-like protein 2 › DUF758 0.55 45.0 4.19e-01 87.1% 90.3%
3200990 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.52 39.0 3.79e-01 78.8% 96.7%
3278758 101.27.1.2 ↗ alpha arrays › HTH › YidB-like › YidB-like › DUF937 0.52 37.0 3.81e-01 73.5% 100.0%
3393571 5059.1.1.4 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › Nuc_sug_transp 0.51 39.0 3.02e-01 81.1% 89.8%
5082140 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.51 30.0 3.17e-01 77.3% 63.6%
4176852 5067.1.1.2 ↗ alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › SecD_SecF 0.51 43.0 3.58e-01 91.7% 65.7%
D2 medium residues 502-626
PDB