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NC_003324.1__YP_010115326.1__PBC5_gp09__00009

Bact-Vir

NC_003324.1__YP_010115326.1__PBC5_gp09__00009

Identity

Accession:
NC_003324 ↗
Kingdom:
phage

Quality

88.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sinorhizobium_phage_PBC5

TaxID: 179237

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-55
PDB
Domain cluster: rep: MF403009.1__AUZ95467.1__X__00034__D3-53
D2 high residues 132-191
PDB
Domain cluster: rep: MN988543.1__QIG75104.1__EVC15_042__00042__D286-333
D3 medium residues 65-118
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6tqoA03 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.59 41.0 3.96e-01 72.2% 81.7%
8be0A01 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.59 43.0 2.98e-01 79.6% 34.0%
3k62A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.54 45.0 2.73e-01 98.1% 31.5%
2gliA04 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.54 31.0 3.64e-01 75.9% 96.8%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4124299 621.1.1.3 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Sey1_3HB 0.62 43.0 3.67e-01 74.1% 88.9%
4982174 242.2.1.2 ↗ a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_endo_N 0.59 42.0 3.97e-01 77.8% 100.0%
3498543 906.1.1.1 ↗ few secondary structure elements › CCCH zinc finger › CCCH zinc finger › CCCH zinc finger › zf-CCCH 0.59 38.0 3.99e-01 90.7% 72.0%
1088178 1.1.5.9 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx,PNP_phzG_C 0.53 36.0 2.46e-01 70.4% 31.4%