←Back to structures

NP_542542.1

Arc-Vir

NC_003345__NP_542542.1__HrrHF2-310__00058

Identity

Accession:
NC_003345 ↗
Protein ID:
NP_542542.1 ↗
Kingdom:
archaea

Quality

93.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Thumleimavirales› Hafunaviridae› Haloferacalesvirus› Halorubrum_phage_HF2

TaxID: 33771

Cluster

View cluster (11 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 26-93
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19905.5 best DUF6378 72.9 2.90e-20 100.0% 74.1%
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1lrzA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.83 53.0 5.52e-01 91.2% 71.0%
3fxdB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.79 55.0 5.92e-01 91.2% 84.5%
4l0rB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.79 53.0 5.16e-01 85.3% 64.4%
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.78 54.0 5.38e-01 95.6% 69.0%
3d36B02 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.77 55.0 5.81e-01 95.6% 82.0%
2qywA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.76 51.0 4.52e-01 85.3% 49.5%
2lt3A01 1.20.58.1290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › CarD-like, C-terminal domain 0.74 46.0 4.02e-01 100.0% 43.0%
1sg2A00 3.30.910.20 Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Skp domain 0.73 49.0 3.82e-01 85.3% 33.3%
4iluA02 1.20.58.1290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › CarD-like, C-terminal domain 0.72 46.0 3.92e-01 100.0% 39.6%
1sumB01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.72 47.0 4.05e-01 91.2% 43.0%
2v6yA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.70 55.0 5.36e-01 98.5% 76.0%
1wfdA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.69 45.0 4.07e-01 77.9% 48.4%
2bvlA01 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 52.0 4.80e-01 95.6% 62.8%
2lxlA00 1.25.40.270 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Vacuolar protein sorting-associated protein vta1 0.68 50.0 3.77e-01 100.0% 32.5%
4u7iA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.68 43.0 3.94e-01 91.2% 47.3%
5c9eB01 1.20.1280.80 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.68 52.0 4.80e-01 98.5% 64.4%
1go3F02 6.10.140.10 Special › Helix non-globular › Helix Hairpins › 0.66 38.0 4.37e-01 89.7% 80.9%
4ioeA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.65 55.0 5.00e-01 89.7% 94.3%
2rdcA00 1.10.287.800 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 0.64 43.0 3.46e-01 70.6% 50.4%
3zgxA02 6.10.140.1720 Special › Helix non-globular › Helix Hairpins › 0.64 45.0 4.11e-01 85.3% 56.0%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.63 47.0 4.60e-01 100.0% 71.4%
2crbA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.62 51.0 4.43e-01 94.1% 60.8%
1hu3A00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.60 41.0 2.97e-01 98.5% 23.5%
2ehwA00 6.10.140.1220 Special › Helix non-globular › Helix Hairpins › 0.60 54.0 4.51e-01 100.0% 73.0%
1nafA02 1.20.58.160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 52.0 4.86e-01 100.0% 76.5%
1j1jA02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.60 46.0 4.31e-01 100.0% 67.1%
5tprA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.59 53.0 3.71e-01 100.0% 95.4%
5jrcA00 1.20.58.2140 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 46.0 3.38e-01 100.0% 31.7%
1uurA01 1.20.58.240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › STAT; domain 1 0.58 53.0 4.49e-01 100.0% 74.5%
3vm9A02 6.10.140.2110 Special › Helix non-globular › Helix Hairpins › 0.58 39.0 4.18e-01 98.5% 82.5%
1u89A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.57 50.0 4.00e-01 100.0% 84.9%
1rp3A01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.56 36.0 3.41e-01 83.8% 52.9%
7zxkC01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.56 48.0 3.80e-01 100.0% 76.0%
2m4eA00 1.20.120.1930 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF16691 family 0.55 43.0 4.04e-01 94.1% 67.4%
4rflA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.55 46.0 3.44e-01 100.0% 72.4%
3u3iA02 1.20.58.1110 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 47.0 4.07e-01 100.0% 86.1%
3umcD02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.53 41.0 4.00e-01 100.0% 75.6%
3nbxX03 1.20.58.1510 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 47.0 4.12e-01 100.0% 72.3%
3a8pA02 6.10.140.680 Special › Helix non-globular › Helix Hairpins › 0.53 44.0 3.66e-01 89.7% 60.5%
3mq1A01 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 45.0 4.13e-01 100.0% 85.9%
2lm9A00 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.50 42.0 3.86e-01 100.0% 80.2%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1501287 601.52.1.2 ↗ alpha bundles › Four-helical up-and-down bundle › Flagellar hook-associated protein 1 helical domain › Flagellar hook-associated protein 1 helical domain › FlgK_D1 0.83 53.0 3.43e-01 85.3% 17.1%
5020701 3755.3.1.637 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF7121 0.81 54.0 3.61e-01 97.1% 20.0%
3999039 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.80 51.0 4.27e-01 95.6% 39.1%
3270441 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.77 58.0 5.62e-01 98.5% 72.0%
3108769 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.76 55.0 5.42e-01 98.5% 71.8%
3499593 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.76 57.0 5.32e-01 94.1% 66.3%
3974488 532.2.1.0 ↗ alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains 0.75 54.0 5.04e-01 100.0% 61.2%
4999686 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.75 58.0 5.57e-01 97.1% 73.3%
3883622 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.74 56.0 5.43e-01 98.5% 72.0%
3267491 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.74 56.0 5.58e-01 98.5% 77.1%
3225484 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.73 59.0 5.83e-01 98.5% 81.4%
4242973 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.73 51.0 3.80e-01 91.2% 31.2%
3402110 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.72 55.0 4.84e-01 98.5% 56.8%
4943123 604.12.1.134 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › AAA 0.72 58.0 5.29e-01 98.5% 67.1%
3686751 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.72 57.0 5.38e-01 98.5% 71.2%
3884438 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.71 57.0 5.34e-01 98.5% 71.2%
3252144 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.71 57.0 5.65e-01 98.5% 81.4%
4024570 604.12.1.2 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 0.71 50.0 4.47e-01 100.0% 52.6%
4159500 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.71 53.0 4.93e-01 98.5% 63.5%
4929706 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.70 56.0 5.55e-01 98.5% 81.4%
3418094 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.70 55.0 5.22e-01 98.5% 71.2%
3507780 604.12.1.8 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › KATNA1_MIT 0.70 55.0 5.07e-01 95.6% 67.1%
1145756 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.69 47.0 3.96e-01 70.6% 41.9%
3974230 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.69 58.0 4.94e-01 89.7% 78.1%
3608758 604.12.1.8 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › KATNA1_MIT 0.68 54.0 5.14e-01 97.1% 72.5%
3463676 109.4.1.1186 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF6857 0.68 43.0 3.32e-01 86.8% 28.4%
4975050 3843.1.1.0 ↗ alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K 0.68 55.0 5.33e-01 88.2% 78.7%
2628027 101.1.11.90 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › DotY 0.67 46.0 4.54e-01 98.5% 67.1%
3926031 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.66 54.0 4.82e-01 98.5% 63.2%
4948675 3930.1.1.3 ↗ alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase › RNA_helicase_helical 0.66 55.0 4.25e-01 100.0% 43.6%
3483761 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.65 59.0 4.42e-01 100.0% 61.8%
4210642 3755.1.1.12 ↗ alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related › CheZ 0.65 42.0 3.44e-01 85.3% 33.8%
3890614 601.33.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain 0.65 47.0 4.67e-01 98.5% 72.9%
3635885 109.4.1.18 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPTA 0.64 52.0 3.87e-01 100.0% 35.9%
3743879 604.6.1.0 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.63 55.0 4.91e-01 100.0% 68.4%
326837 3805.1.1.1 ↗ alpha bundles › Hypothetical protein TTHB059 › Hypothetical protein TTHB059 › Hypothetical protein TTHB059 › DUF3209 0.60 54.0 4.50e-01 100.0% 71.8%
4002826 604.12.1.9 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ATG1-like_MIT2 0.60 41.0 3.67e-01 79.4% 49.0%
4927302 1075.1.2.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain 0.60 50.0 4.12e-01 100.0% 49.3%
4433995 1197.1.1.1 ↗ alpha bundles › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › G3P_acyltransf 0.59 52.0 3.67e-01 100.0% 42.3%
3269429 603.2.1.2 ↗ alpha bundles › STAT-like › STAT › STAT › Dict-STAT-coil 0.59 55.0 4.51e-01 100.0% 71.3%
3936950 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 51.0 4.44e-01 94.1% 78.0%
3607639 10.12.1.9 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC 0.58 53.0 3.27e-01 100.0% 41.7%
4978312 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.58 43.0 4.32e-01 97.1% 78.6%
5039441 633.21.1.47 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › SPW 0.57 43.0 3.68e-01 80.9% 51.8%
3388894 133.1.1.12 ↗ alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › DH_ALS2 0.57 43.0 3.21e-01 82.4% 38.9%
5064406 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.57 51.0 4.23e-01 100.0% 72.5%
3250261 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.56 38.0 3.54e-01 85.3% 52.2%
3830963 603.1.1.100 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27017 0.55 48.0 4.04e-01 98.5% 68.3%
3407072 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.55 42.0 4.07e-01 97.1% 72.5%
3797118 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.55 48.0 4.09e-01 100.0% 76.5%
3341063 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.55 47.0 3.14e-01 100.0% 63.7%
3497122 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.54 47.0 2.96e-01 100.0% 21.1%
3288073 7579.1.1.137 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › FrsA-like, Abhydrolase_6 0.53 42.0 2.64e-01 88.2% 23.0%
3254975 603.2.1.2 ↗ alpha bundles › STAT-like › STAT › STAT › Dict-STAT-coil 0.53 42.0 3.58e-01 95.6% 52.2%
3513714 109.4.1.195 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_11 0.53 46.0 3.39e-01 94.1% 43.6%
3220228 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.52 46.0 4.00e-01 100.0% 77.1%
4049578 633.12.1.1 ↗ alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › UPF0147 0.51 42.0 3.97e-01 100.0% 94.3%