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NC_004066.1__NP_663643.1__ul36_09__00009

Bact-Vir

NC_004066.1__NP_663643.1__ul36_09__00009

Identity

Accession:
NC_004066 ↗
Kingdom:
phage

Quality

83.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lactococcus_phage_ul36

TaxID: 114416

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-75
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.79 61.0 6.53e-01 82.2% 100.0%
2rpaA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.72 49.0 4.89e-01 71.2% 84.4%
1b04A03 1.10.287.610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.69 36.0 3.85e-01 84.9% 58.1%
1nafA02 1.20.58.160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 48.0 4.61e-01 74.0% 88.2%
2au3A04 1.20.50.30 Mainly Alpha › Up-down Bundle › Pheromone ER-1 › 0.68 44.0 5.03e-01 76.7% 89.1%
1owlA02 1.25.40.80 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.67 53.0 4.39e-01 83.6% 52.8%
2l6jA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.67 48.0 4.14e-01 75.3% 77.5%
4r42A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.67 52.0 3.83e-01 83.6% 90.4%
2r7rA05 1.10.357.80 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.67 53.0 3.94e-01 84.9% 62.5%
3vkgB03 1.20.58.1120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dynein motor heavy chain, linker domain, subdomain 4 0.66 50.0 3.86e-01 80.8% 51.9%
1v0dA01 6.10.140.170 Special › Helix non-globular › Helix Hairpins › 0.66 41.0 4.83e-01 75.3% 93.9%
3f4mA00 1.20.1440.160 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like 0.65 51.0 3.98e-01 83.6% 68.8%
7k3zG01 3.50.7.10 Alpha Beta › 3-Layer(bba) Sandwich › GroEL › GroEL 0.65 51.0 3.64e-01 83.6% 50.7%
6vxcA01 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.64 51.0 2.90e-01 86.3% 31.7%
2wzkA01 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.64 50.0 4.21e-01 86.3% 65.4%
2crbA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.63 51.0 4.65e-01 86.3% 77.3%
6wshA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 43.0 4.83e-01 75.3% 92.7%
2xzmV01 1.10.60.20 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 0.63 48.0 5.14e-01 84.9% 96.7%
2ib0A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.62 47.0 3.78e-01 79.5% 63.7%
1dpsA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.62 46.0 3.60e-01 79.5% 57.2%
6tmfT00 1.10.60.20 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 0.62 47.0 5.01e-01 86.3% 95.3%
1dd9A03 1.20.50.20 Mainly Alpha › Up-down Bundle › Pheromone ER-1 › DnaG, RNA polymerase domain, helical bundle 0.61 46.0 5.07e-01 80.8% 100.0%
3lkdB01 1.20.1260.30 Mainly Alpha › Up-down Bundle › Ferritin › N6 adenine-specific DNA methyltransferase, N-terminal domain 0.60 47.0 3.52e-01 84.9% 40.5%
4by6D02 1.25.40.800 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.60 49.0 3.53e-01 91.8% 52.0%
6axgA01 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.60 49.0 4.66e-01 91.8% 80.9%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.59 42.0 4.04e-01 76.7% 81.2%
4fxdA04 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.58 47.0 3.82e-01 93.2% 100.0%
2hoqA02 1.10.150.520 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.53 36.0 3.52e-01 80.8% 63.3%
3h5qA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.52 35.0 3.58e-01 71.2% 71.4%
3vwbA00 1.10.10.2830 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.52 39.0 3.42e-01 83.6% 64.7%
4ipeB02 3.30.230.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.51 41.0 3.26e-01 89.0% 66.7%
7bi4A01 1.25.40.70 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Phosphatidylinositol 3-kinase, accessory domain (PIK) 0.51 41.0 3.15e-01 91.8% 57.5%
1k32A03 3.30.750.44 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › 0.51 37.0 3.75e-01 76.7% 87.5%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3986794 639.2.1.1 ↗ alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › YmgB 0.77 61.0 6.30e-01 84.9% 90.0%
4982026 150.1.1.209 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › DUF7121 0.77 54.0 4.25e-01 72.6% 67.1%
4006612 639.2.1.1 ↗ alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › YmgB 0.76 59.0 5.57e-01 82.2% 72.9%
3686751 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.75 52.0 5.03e-01 71.2% 81.2%
3879426 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.73 50.0 4.83e-01 71.2% 81.9%
4009705 639.2.1.0 ↗ alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) 0.72 52.0 5.61e-01 75.3% 100.0%
3510771 610.4.1.0 ↗ alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain 0.72 53.0 4.70e-01 76.7% 65.0%
1447979 3909.1.1.1 ↗ alpha bundles › NisB C-terminal helical domain › NisB C-terminal helical domain › NisB C-terminal helical domain › Lant_dehydr_C 0.72 57.0 4.55e-01 84.9% 77.3%
3418094 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.72 49.0 4.80e-01 71.2% 82.5%
3884438 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.71 50.0 4.84e-01 72.6% 82.5%
3507780 604.12.1.8 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › KATNA1_MIT 0.71 49.0 4.64e-01 71.2% 80.0%
5052410 109.4.1.257 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PDS5 0.71 57.0 3.51e-01 89.0% 14.5%
2526061 109.4.1.236 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › T6SS_VasJ 0.71 55.0 5.08e-01 86.3% 65.9%
3237761 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.71 49.0 4.41e-01 72.6% 82.0%
3602860 109.61.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Uncharacterized protein PF2048.1 › Uncharacterized protein PF2048.1 › MJ1579 0.70 51.0 5.20e-01 82.2% 80.0%
4618995 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.70 49.0 4.37e-01 72.6% 87.0%
1807423 622.6.1.1 ↗ alpha bundles › YvfG-like › NLR family member X1 C-terminal domain › NLR family member X1 C-terminal domain › NLRX1_C 0.69 50.0 5.31e-01 75.3% 100.0%
3512636 3930.1.1.6 ↗ alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase › Dicer_PBD 0.69 56.0 4.72e-01 84.9% 76.5%
3267491 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.69 48.0 4.96e-01 72.6% 92.9%
3773235 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.68 47.0 4.43e-01 72.6% 72.2%
3712534 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 49.0 3.22e-01 76.7% 19.3%
3176259 109.4.1.602 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Dor1 0.67 52.0 3.55e-01 83.6% 35.0%
4002826 604.12.1.9 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ATG1-like_MIT2 0.67 48.0 4.38e-01 76.7% 74.0%
3392936 7542.1.1.0 ↗ a/b three-layered sandwiches › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain 0.65 49.0 3.62e-01 80.8% 97.8%
4090024 4246.1.1.2 ↗ a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 0.65 50.0 3.20e-01 82.2% 34.0%
4983638 604.6.1.0 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.64 47.0 4.81e-01 76.7% 81.2%
4675496 3198.1.1.1 ↗ alpha bundles › ABA-1 repeat unit › ABA-1 repeat unit › ABA-1 repeat unit › NPA 0.63 48.0 4.12e-01 82.2% 100.0%
5053145 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.60 45.0 4.66e-01 79.5% 84.3%
3576811 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 44.0 3.02e-01 80.8% 22.7%
1680005 604.30.1.1 ↗ alpha bundles › Spectrin repeat-like › Gamma-secretase subunit PEN-2 › Gamma-secretase subunit PEN-2 › PEN-2 0.59 40.0 3.66e-01 75.3% 52.0%
3997012 604.30.1.1 ↗ alpha bundles › Spectrin repeat-like › Gamma-secretase subunit PEN-2 › Gamma-secretase subunit PEN-2 › PEN-2 0.58 42.0 3.88e-01 76.7% 62.1%
3923704 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 45.0 3.21e-01 87.7% 25.6%
3440101 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 52.0 2.93e-01 100.0% 51.2%
3370407 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 50.0 2.88e-01 100.0% 29.3%
3255248 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.56 41.0 4.25e-01 79.5% 85.7%
4661411 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.52 41.0 4.05e-01 90.4% 92.5%
4962781 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.52 42.0 4.18e-01 84.9% 93.3%
3257866 4967.1.1.0 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.52 43.0 3.21e-01 97.3% 53.8%