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NP_665996.1

Arc-Vir

NC_004084__NP_665996.1__PhiCh1p79__00079

Identity

Accession:
NC_004084 ↗
Protein ID:
NP_665996.1 ↗
Kingdom:
archaea

Quality

63.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vertoviridae› Myohalovirus› Natrialba_phage_PhiCh1

TaxID: 114777

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-76
PDB
D2 high residues 80-182
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 33.0 3.76e-01 81.6% 64.0%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.61 41.0 4.55e-01 71.8% 87.5%
4bg7A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.57 40.0 4.07e-01 71.8% 87.8%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.56 40.0 3.55e-01 82.5% 50.6%
3pieB05 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 34.0 4.11e-01 82.5% 100.0%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.54 34.0 3.66e-01 80.6% 73.0%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.54 38.0 3.62e-01 73.8% 79.8%
2ehbD00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.54 32.0 3.06e-01 81.6% 48.4%
3t4nA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.54 35.0 3.62e-01 80.6% 69.8%
1vavA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 45.0 3.58e-01 94.2% 86.9%
2v43A01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.53 45.0 3.82e-01 96.1% 93.4%
1nrvA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 39.0 3.99e-01 100.0% 79.0%
3zxkA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 45.0 3.59e-01 95.1% 81.0%
1f2uA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 42.0 3.78e-01 87.4% 89.3%
1kz7C02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 37.0 3.42e-01 73.8% 77.4%
2lexA00 2.20.25.80 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain 0.52 30.0 3.70e-01 76.7% 93.7%
1yemB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.52 40.0 3.47e-01 82.5% 59.0%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4061226 220.1.1.154 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_EXO84 0.62 44.0 3.76e-01 74.8% 64.6%
3182463 220.1.1.154 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_EXO84 0.60 43.0 3.52e-01 73.8% 63.6%
3557314 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.60 43.0 3.95e-01 100.0% 57.0%
3209928 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 43.0 2.78e-01 77.7% 96.1%
3712071 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.57 42.0 3.05e-01 77.7% 97.6%
5042040 868.1.1.1 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH 0.56 42.0 3.61e-01 80.6% 77.6%
3352682 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.55 33.0 3.87e-01 80.6% 87.1%
3516336 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.55 41.0 3.82e-01 100.0% 63.1%
3509371 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.55 42.0 4.12e-01 100.0% 74.8%
3389857 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.54 40.0 3.69e-01 100.0% 58.6%
3509199 633.23.1.4 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 0.54 40.0 3.30e-01 79.6% 81.0%
3972828 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.54 38.0 3.19e-01 74.8% 57.3%
3677415 331.4.1.2 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF 0.53 33.0 3.14e-01 76.7% 52.5%
3877730 2484.1.1.5 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hexokinase_1 0.53 37.0 2.89e-01 70.9% 63.9%
3613742 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 42.0 2.75e-01 86.4% 40.7%
3931922 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 40.0 2.79e-01 82.5% 80.3%
3398694 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.52 38.0 3.85e-01 75.7% 91.4%
3581025 376.1.2.15 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › SOS1_NGEF_PH 0.52 37.0 3.27e-01 74.8% 63.7%
3458862 331.4.1.2 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF 0.52 33.0 3.05e-01 79.6% 48.9%
3464481 5.1.3.142 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.51 40.0 2.77e-01 84.5% 93.9%
3788477 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 36.0 3.56e-01 74.8% 80.0%
3873775 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.51 39.0 3.08e-01 80.6% 69.8%
3613221 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 40.0 2.65e-01 87.4% 65.2%
3277940 3844.2.1.1 ↗ a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.51 38.0 3.01e-01 82.5% 54.2%
5025094 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.50 42.0 4.08e-01 91.3% 100.0%