←Back to structures

NP_666541.1

Arc-Vir

NC_004086__NP_666541.1__SIRV2gp07__00007

Identity

Accession:
NC_004086 ↗
Protein ID:
NP_666541.1 ↗
Kingdom:
archaea

Quality

83.3 mean pLDDT

Taxonomy

Zilligvirae› Taleaviricota› Tokiviricetes› Ligamenvirales› Rudiviridae› Icerudivirus› Sulfolobus_islandicus_rod-shaped_virus_2

TaxID: 157899

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-130
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1o8vA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.65 49.0 4.55e-01 78.0% 90.2%
7d8gA01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.62 47.0 4.12e-01 81.7% 59.9%
6wilA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.61 51.0 3.48e-01 87.2% 56.7%
3aa0B02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.61 42.0 3.74e-01 70.6% 81.3%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.61 38.0 3.35e-01 85.3% 40.7%
5w0kA01 3.90.380.20 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Herpesvirus glycoprotein H, domain D-II 0.60 45.0 3.14e-01 77.1% 51.4%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 44.0 4.16e-01 77.1% 88.1%
1jmxA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.60 43.0 4.33e-01 95.4% 74.3%
4ghbA00 2.40.160.190 Mainly Beta › Beta Barrel › Porin › 0.59 44.0 3.33e-01 78.9% 72.9%
1r0uA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 44.0 4.05e-01 79.8% 79.6%
4rzkA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 41.0 4.57e-01 78.9% 93.1%
8bddA02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.57 48.0 3.39e-01 94.5% 70.8%
4kc7A02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.57 39.0 4.14e-01 95.4% 78.8%
6r3wA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 46.0 4.00e-01 91.7% 58.4%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 47.0 4.53e-01 92.7% 94.5%
3kyfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 48.0 4.75e-01 100.0% 93.9%
4mlgG00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 38.0 2.71e-01 72.5% 99.4%
3bvxA04 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.53 45.0 3.40e-01 93.6% 84.6%
6fopA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.53 45.0 3.57e-01 93.6% 63.7%
8ornD01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.53 46.0 3.94e-01 94.5% 77.8%
4feiA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 40.0 4.13e-01 78.9% 88.2%
4hn7A00 2.40.50.650 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 34.0 3.79e-01 90.8% 83.5%
3c7fA02 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 36.0 2.58e-01 70.6% 35.4%
2pcsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 49.0 4.32e-01 100.0% 73.0%
3a0oA03 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.52 45.0 3.35e-01 94.5% 82.9%
4jglA00 2.40.128.530 Mainly Beta › Beta Barrel › Lipocalin › 0.52 41.0 3.63e-01 82.6% 98.0%
1y9lA00 2.40.128.230 Mainly Beta › Beta Barrel › Lipocalin › Pilot protein MxiM 0.52 38.0 3.83e-01 76.1% 86.4%
4ydzA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 39.0 3.64e-01 78.9% 65.9%
2ns9A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 48.0 4.32e-01 100.0% 73.6%
5upiA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.52 44.0 3.68e-01 92.7% 89.4%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.52 44.0 4.29e-01 92.7% 90.8%
6eufA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 35.0 2.60e-01 70.6% 36.0%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.51 43.0 4.22e-01 92.7% 90.0%
3zhaQ02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.51 38.0 3.60e-01 79.8% 99.2%
1ohfA03 2.60.270.70 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.51 42.0 3.85e-01 89.0% 87.9%
1x53A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 41.0 3.87e-01 100.0% 74.0%
6mv2A01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 41.0 4.30e-01 96.3% 95.1%
1b9vA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.50 40.0 2.75e-01 85.3% 47.4%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4419937 77.1.1.0 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.74 45.0 5.05e-01 71.6% 77.6%
4032202 4237.1.1.1 ↗ beta barrels › FomD-like › FomD-like › FomD-like › DUF402 0.61 46.0 4.01e-01 81.7% 57.1%
4946053 4237.1.1.0 ↗ beta barrels › FomD-like › FomD-like › FomD-like 0.60 45.0 4.01e-01 79.8% 66.5%
1291144 9.1.1.27 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › MoaF_C 0.59 45.0 4.43e-01 79.8% 82.9%
4373611 4237.1.1.1 ↗ beta barrels › FomD-like › FomD-like › FomD-like › DUF402 0.59 44.0 3.86e-01 80.7% 60.0%
2641778 318.1.1.0 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.59 38.0 4.30e-01 76.1% 87.8%
3693958 331.3.1.17 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.59 48.0 3.73e-01 87.2% 81.3%
5013018 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.58 50.0 4.70e-01 91.7% 80.8%
1930620 1133.1.1.0 ↗ beta sandwiches › Immunomodulator A46 N-terminal domain › Immunomodulator A46 N-terminal domain › Immunomodulator A46 N-terminal domain 0.58 38.0 4.56e-01 96.3% 97.4%
3249088 12.3.1.46 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › ComC_SSD 0.57 47.0 3.77e-01 89.0% 90.0%
3252995 12.3.1.46 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › ComC_SSD 0.56 48.0 3.81e-01 93.6% 92.4%
3292710 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.56 45.0 3.82e-01 86.2% 97.8%
3910728 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.55 46.0 4.07e-01 94.5% 62.6%
3195470 331.3.1.17 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.55 44.0 3.51e-01 88.1% 80.9%
3264178 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.55 41.0 3.80e-01 78.9% 67.1%
4224449 5084.1.1.29 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PF27340 0.54 48.0 4.07e-01 95.4% 76.4%
3598621 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.54 43.0 4.59e-01 83.5% 95.8%
3706187 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.54 42.0 4.64e-01 83.5% 100.0%
3716575 109.4.1.747 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SGS 0.54 42.0 3.96e-01 82.6% 66.7%
3997716 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.54 31.0 3.58e-01 94.5% 80.0%
4008277 5084.5.1.62 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › PF27458 0.54 50.0 3.52e-01 100.0% 88.1%
4022018 3385.1.1.0 ↗ beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 0.54 47.0 4.41e-01 93.6% 96.2%
3648159 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.54 41.0 3.89e-01 79.8% 71.5%
3676350 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.54 41.0 4.19e-01 79.8% 95.2%
5038572 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.53 48.0 4.29e-01 100.0% 70.0%
5025492 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.53 41.0 3.25e-01 81.7% 57.3%
5032791 4252.1.1.1 ↗ beta barrels › AttH-like › AttH-like › AttH-like › CrtC 0.53 48.0 3.95e-01 98.2% 72.6%
5039993 12.3.1.40 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › TREH_N 0.52 45.0 3.67e-01 94.5% 87.3%
4183697 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.52 39.0 3.52e-01 79.8% 61.9%
6333 331.3.1.7 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.52 48.0 4.33e-01 100.0% 74.1%
3808998 331.3.1.28 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF220 0.51 47.0 3.77e-01 100.0% 66.3%
2724021 331.3.1.9 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.51 42.0 3.62e-01 100.0% 56.1%
5018398 12.3.1.75 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › GDE_N_bis 0.51 43.0 3.44e-01 90.8% 89.8%
5009761 331.3.1.7 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.51 47.0 4.29e-01 100.0% 78.6%
3743876 331.3.1.17 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.51 47.0 3.70e-01 100.0% 66.4%
4934107 331.3.1.7 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.51 47.0 4.15e-01 100.0% 78.1%
3519502 331.3.1.9 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.51 41.0 4.00e-01 100.0% 77.6%
3630050 331.3.1.9 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.50 41.0 3.66e-01 100.0% 62.6%