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NP_666590.1

Arc-Vir

NC_004087__NP_666590.1__SIRV1gp02__00002

Identity

Accession:
NC_004087 ↗
Protein ID:
NP_666590.1 ↗
Kingdom:
archaea

Quality

81.9 mean pLDDT

Taxonomy

Zilligvirae› Taleaviricota› Tokiviricetes› Ligamenvirales› Rudiviridae› Icerudivirus› Sulfolobus_islandicus_rod-shaped_virus_1

TaxID: 157898

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-85
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7xxiA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.75 53.0 3.63e-01 74.7% 78.6%
2qqyA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.66 45.0 3.72e-01 73.5% 42.0%
2a9uA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.66 52.0 4.46e-01 96.4% 54.8%
2pybA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.66 46.0 3.68e-01 74.7% 39.7%
3kwoA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.65 45.0 3.66e-01 74.7% 40.3%
3t9jA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.65 46.0 3.71e-01 74.7% 41.7%
2yjkC00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.64 44.0 3.53e-01 74.7% 38.2%
2lsgA00 1.20.58.1280 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DNA repair protein Rev1, C-terminal domain 0.63 40.0 3.88e-01 98.8% 55.7%
2vzbB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.62 43.0 3.36e-01 74.7% 35.9%
4ivfA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.62 49.0 4.38e-01 85.5% 75.9%
4agsB04 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.62 55.0 4.67e-01 97.6% 76.7%
1hqoA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.61 52.0 4.39e-01 91.6% 71.8%
4axhA03 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.60 39.0 3.43e-01 97.6% 43.0%
4q5nA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.58 48.0 4.39e-01 91.6% 76.8%
4xpwA00 1.20.120.50 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like 0.58 53.0 4.51e-01 100.0% 71.8%
2cfuA03 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.57 39.0 3.43e-01 100.0% 45.0%
1skoA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.57 41.0 3.67e-01 75.9% 75.6%
2j49A00 1.25.40.500 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TFIID subunit TAF5, NTD2 domain 0.57 48.0 4.07e-01 91.6% 66.4%
5hsqA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 41.0 3.59e-01 84.3% 49.6%
2qywA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.57 51.0 4.90e-01 97.6% 85.3%
3k2tA01 3.30.505.50 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain 0.57 32.0 3.99e-01 98.8% 100.0%
1wcrA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.56 51.0 4.76e-01 98.8% 82.5%
1i5nB00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.56 51.0 4.43e-01 100.0% 70.2%
1vcsA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.55 49.0 4.60e-01 96.4% 81.4%
3s6gA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 35.0 2.97e-01 98.8% 37.0%
2z6oA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.54 41.0 3.35e-01 81.9% 80.1%
3l8rA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.54 49.0 4.56e-01 97.6% 82.4%
4jbeB01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.54 44.0 3.14e-01 90.4% 89.0%
1j3wC00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.54 39.0 3.44e-01 83.1% 48.9%
1p9rA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.54 45.0 4.14e-01 94.0% 89.2%
2kxpA01 3.30.1140.60 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit 0.54 40.0 3.76e-01 81.9% 75.7%
3qc1A01 1.25.40.540 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TAP42-like family 0.54 48.0 3.93e-01 98.8% 86.1%
3rq9A00 1.10.287.2500 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 42.0 4.35e-01 100.0% 91.0%
2p61A00 1.20.120.490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hypothetical protein TM1646-like domain 0.53 47.0 4.28e-01 100.0% 86.0%
4dlqA02 1.25.40.610 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 39.0 3.76e-01 97.6% 68.4%
6n7pX01 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 44.0 3.01e-01 90.4% 42.5%
1dowA00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.53 48.0 3.57e-01 100.0% 46.8%
4obuA01 3.90.1150.170 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.52 34.0 2.56e-01 88.0% 24.4%
4iggB02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.51 45.0 4.05e-01 100.0% 80.2%
4hh2B03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 38.0 3.67e-01 83.1% 75.0%
3ll9B00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.51 45.0 3.26e-01 100.0% 59.4%
1s35A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 45.0 4.25e-01 98.8% 89.1%
4ib4A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.51 44.0 3.11e-01 100.0% 73.0%
2jisA01 3.90.1150.170 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.51 38.0 2.89e-01 84.3% 56.5%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2526764 150.1.1.1 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Ferritin 0.67 47.0 3.71e-01 74.7% 38.5%
3720823 109.4.1.1255 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 0.66 52.0 2.98e-01 97.6% 9.5%
137840 150.1.1.1 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Ferritin 0.65 45.0 3.66e-01 74.7% 40.3%
5083496 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 43.0 3.77e-01 83.1% 49.6%
5007973 268.1.1.1 ↗ a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › SCP2 0.60 41.0 3.69e-01 85.5% 51.8%
3649030 603.1.1.97 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin, SNARE 0.60 51.0 3.48e-01 91.6% 58.1%
5050326 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 45.0 4.02e-01 83.1% 64.0%
4609853 225.1.1.3 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.59 51.0 3.52e-01 92.8% 43.8%
2553536 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.58 41.0 3.59e-01 83.1% 46.6%
3526861 603.1.1.99 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27021 0.58 52.0 4.71e-01 97.6% 72.7%
3740818 109.54.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › Utp12 0.58 39.0 3.28e-01 95.2% 39.3%
3361177 109.4.1.541 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF4220 0.58 52.0 3.60e-01 100.0% 89.1%
3697816 2008.1.1.99 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_12 0.57 45.0 3.52e-01 85.5% 95.1%
3460130 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.57 50.0 5.08e-01 97.6% 97.5%
2791539 3281.1.1.1 ↗ alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M 0.57 46.0 2.94e-01 90.4% 97.9%
3697999 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 50.0 3.51e-01 96.4% 55.7%
None — 0.56 50.0 3.64e-01 97.6% 97.3%
3227816 216.1.1.20 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.56 41.0 2.99e-01 77.1% 80.8%
3868090 109.54.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › Utp12 0.56 38.0 3.07e-01 95.2% 33.5%
5063657 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.56 39.0 3.51e-01 81.9% 50.4%
3594525 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.56 51.0 4.82e-01 98.8% 85.0%
165192 150.1.1.1 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Ferritin 0.56 49.0 4.12e-01 95.2% 88.5%
3255416 3560.1.1.0 ↗ a+b complex topology › Mediator of RNA polymerase II transcription subunit 8 › Mediator of RNA polymerase II transcription subunit 8 › Mediator of RNA polymerase II transcription subunit 8 0.56 47.0 3.86e-01 88.0% 62.9%
3742968 223.5.1.0 ↗ a+b three layers › Profilin-like › YNR034W-A-like › YNR034W-A-like 0.56 41.0 4.26e-01 83.1% 84.0%
5050426 223.2.1.12 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › MAPKK1_Int 0.56 39.0 3.59e-01 83.1% 52.5%
4838661 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 41.0 3.76e-01 84.3% 58.7%
3774436 109.54.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › Utp12 0.56 37.0 3.27e-01 95.2% 42.2%
3412468 109.40.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › Ctf4_C 0.56 49.0 4.61e-01 94.0% 87.0%
3712097 4970.1.1.0 ↗ alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.55 46.0 4.54e-01 94.0% 98.9%
4946684 2004.1.1.308 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.55 47.0 3.18e-01 100.0% 36.6%
4971324 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.54 41.0 4.08e-01 81.9% 83.3%
3284941 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 40.0 3.79e-01 83.1% 63.8%
1498421 4091.1.1.1 ↗ beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › YkuD 0.54 36.0 3.09e-01 72.3% 40.0%
4032095 6043.1.1.6 ↗ a+b two layers › yfeY-like › yfeY-like › yfeY-like › PF28288 0.54 41.0 4.31e-01 83.1% 100.0%
4967607 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.53 37.0 3.06e-01 72.3% 55.5%
None — 0.53 45.0 3.13e-01 98.8% 71.7%
4998444 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.53 42.0 3.60e-01 86.7% 57.0%
5073565 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 40.0 3.95e-01 83.1% 83.3%
3414236 5.1.4.94 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Det1 0.53 46.0 2.85e-01 100.0% 86.5%
3526903 4312.2.1.0 ↗ a+b two layers › RelE-like › YaeB-like › YaeB-like 0.52 42.0 3.94e-01 86.7% 77.8%
3276550 4312.2.1.0 ↗ a+b two layers › RelE-like › YaeB-like › YaeB-like 0.52 42.0 4.05e-01 86.7% 86.0%
3169487 109.4.1.309 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Med12 0.52 45.0 2.54e-01 98.8% 11.7%
4936930 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.51 44.0 3.30e-01 91.6% 53.7%
3603559 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.51 40.0 3.69e-01 86.7% 65.5%
4957253 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.51 39.0 3.55e-01 86.7% 61.8%
3282065 3226.1.1.1 ↗ alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA › Xan_ur_permease 0.51 46.0 2.88e-01 100.0% 61.9%
3470957 109.4.1.19 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vitellogenin_N 0.50 40.0 2.66e-01 89.2% 29.1%