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NC_004166.2__NP_690652.1__SPP1p001__00001

Bact-Vir

NC_004166.2__NP_690652.1__SPP1p001__00001

Identity

Accession:
NC_004166 ↗
Kingdom:
phage

Quality

74.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-68
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03592.22 best Terminase_2 65.4 1.20e-17 100.0% 37.8%
D2 medium residues 70-133
PDB
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3zqmA00 6.10.140.2160 Special › Helix non-globular › Helix Hairpins › 0.97 77.0 8.07e-01 82.8% 89.8%
1xttB00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.77 51.0 3.49e-01 96.9% 20.7%
4jdmA02 6.10.250.2680 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.69 39.0 3.97e-01 73.4% 55.6%
2qv6B02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.68 39.0 3.13e-01 81.2% 29.5%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 46.0 3.82e-01 85.9% 46.2%
2mkyA00 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.61 28.0 2.93e-01 70.3% 39.7%
3v3kD00 1.20.1260.90 Mainly Alpha › Up-down Bundle › Ferritin › 0.61 50.0 3.74e-01 100.0% 36.0%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 47.0 3.81e-01 85.9% 80.8%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 50.0 4.36e-01 98.4% 99.0%
2od4B01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 31.0 2.81e-01 87.5% 34.8%
6ztgA01 3.30.70.1070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat 0.57 27.0 2.55e-01 76.6% 32.0%
7ewfA01 1.25.40.990 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.57 43.0 2.97e-01 84.4% 32.8%
1khmA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.57 35.0 3.16e-01 98.4% 46.1%
3eo7A02 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.56 49.0 3.25e-01 96.9% 47.6%
2zdiC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.56 49.0 3.80e-01 98.4% 85.8%
1cg2A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.56 39.0 2.56e-01 71.9% 43.4%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 47.0 4.12e-01 100.0% 95.1%
3h4rA00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.55 48.0 3.32e-01 96.9% 90.0%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 48.0 4.19e-01 100.0% 87.0%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 46.0 3.80e-01 96.9% 86.7%
6ko5A02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.55 48.0 3.14e-01 100.0% 27.7%
1bd3A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 39.0 2.72e-01 96.9% 21.9%
1h8eG02 3.40.1380.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit 0.54 48.0 3.49e-01 100.0% 81.5%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 47.0 3.98e-01 96.9% 59.4%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 46.0 3.61e-01 98.4% 63.8%
2n8lA00 3.30.310.210 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.54 45.0 3.18e-01 98.4% 30.9%
2ff4A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 44.0 3.81e-01 90.6% 61.6%
6ui4A01 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.53 39.0 3.54e-01 79.7% 100.0%
6psyA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.53 43.0 3.01e-01 92.2% 69.6%
6zepA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.53 41.0 2.66e-01 85.9% 32.0%
4e1oA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 38.0 3.32e-01 98.4% 50.0%
3sm4A00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.52 44.0 3.06e-01 96.9% 82.7%
2cteA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.52 44.0 4.08e-01 96.9% 74.7%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 43.0 3.91e-01 100.0% 99.0%
2ahoB03 3.30.70.1130 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › EIF_2_alpha 0.52 41.0 3.67e-01 93.8% 62.5%
7wu7501 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.51 42.0 3.50e-01 96.9% 84.1%
2ethA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 44.0 3.49e-01 100.0% 61.7%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 38.0 3.52e-01 85.9% 96.6%
1j4wA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.50 39.0 3.71e-01 90.6% 71.6%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.50 36.0 3.20e-01 92.2% 53.3%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1033457 3218.1.1.0 a+b duplicates or obligate multimers › small terminase oligomerization domain › small terminase oligomerization domain › small terminase oligomerization domain 0.97 78.0 8.18e-01 82.8% 91.4%
1834407 3218.1.1.1 a+b duplicates or obligate multimers › small terminase oligomerization domain › small terminase oligomerization domain › small terminase oligomerization domain › Terminase_2 0.96 81.0 7.47e-01 87.5% 71.8%
3829017 263.1.1.1 a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.71 40.0 3.82e-01 100.0% 46.7%
5049996 4244.1.1.0 a/b three-layered sandwiches › EreA/ChaN-like › EreA/ChaN-like › EreA/ChaN-like 0.70 44.0 3.02e-01 90.6% 19.5%
4976807 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.63 47.0 3.69e-01 84.4% 40.0%
3225206 5076.1.1.0 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier 0.63 56.0 3.54e-01 100.0% 35.0%
2687 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.63 46.0 3.78e-01 89.1% 45.0%
4943364 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 54.0 4.29e-01 93.8% 90.2%
5080131 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.63 49.0 3.92e-01 82.8% 85.0%
5005582 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.62 49.0 3.88e-01 89.1% 44.2%
5065786 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.61 52.0 4.21e-01 93.8% 90.8%
4982081 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.61 45.0 3.68e-01 84.4% 43.5%
4975513 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.61 49.0 4.03e-01 85.9% 96.4%
3627409 6166.1.1.1 alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › ERG4_ERG24 0.61 54.0 3.76e-01 98.4% 73.5%
3491256 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.61 50.0 3.61e-01 98.4% 32.6%
3173926 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.60 51.0 3.76e-01 96.9% 68.9%
5019432 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.60 47.0 3.67e-01 82.8% 77.7%
4303742 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.60 52.0 4.24e-01 96.9% 84.2%
3755628 5001.1.1.5 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 0.60 51.0 3.42e-01 100.0% 80.0%
3599620 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.59 51.0 4.23e-01 96.9% 85.2%
4941487 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.59 51.0 4.19e-01 96.9% 84.2%
4626792 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.59 51.0 3.92e-01 96.9% 69.7%
3398317 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.59 51.0 3.82e-01 96.9% 61.3%
3483425 3745.1.1.0 alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger 0.59 52.0 3.12e-01 96.9% 73.7%
5031648 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.59 48.0 3.60e-01 92.2% 44.2%
5036589 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.58 50.0 4.00e-01 98.4% 93.3%
3515407 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.58 52.0 3.85e-01 100.0% 89.3%
4485921 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.58 50.0 4.10e-01 96.9% 95.8%
5048161 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.58 50.0 3.94e-01 98.4% 90.0%
4011414 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.58 52.0 3.57e-01 100.0% 53.0%
4934732 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.58 49.0 4.07e-01 98.4% 88.3%
3238753 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.57 51.0 3.74e-01 100.0% 85.1%
4942428 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.57 48.0 3.89e-01 98.4% 78.5%
4023956 3871.1.1.1 alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.57 48.0 3.87e-01 95.3% 78.5%
3637642 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.57 48.0 3.94e-01 96.9% 52.7%
4983053 304.19.1.1 a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha 0.57 43.0 3.93e-01 93.8% 61.2%
3589151 829.1.1.2 a+b duplicates or obligate multimers › NinB › NinB › NinB › HNHc_6 0.57 41.0 3.21e-01 87.5% 38.4%
5069467 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.57 47.0 3.77e-01 98.4% 73.1%
5035888 304.19.1.1 a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha 0.57 46.0 4.11e-01 95.3% 64.7%
4532543 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.56 48.0 3.81e-01 98.4% 90.0%
3587631 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.56 50.0 3.82e-01 96.9% 80.0%
3338778 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.56 38.0 2.65e-01 76.6% 18.8%
4595166 5076.2.1.0 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ 0.56 48.0 3.33e-01 98.4% 36.9%
3594109 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.56 47.0 3.66e-01 98.4% 84.7%
3603899 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.55 47.0 3.74e-01 98.4% 68.1%
4965203 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.55 44.0 3.66e-01 85.9% 91.7%
4281419 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.55 47.0 3.72e-01 96.9% 90.6%
5022380 3755.3.1.632 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Prefoldin 0.55 47.0 3.71e-01 98.4% 65.7%
3280874 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 48.0 2.97e-01 98.4% 17.6%
4026519 3871.1.1.1 alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.55 47.0 3.68e-01 95.3% 57.8%
3244833 3914.1.1.2 alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › Anoctamin,Anoct_dimer 0.54 45.0 2.58e-01 98.4% 8.6%
4928248 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 46.0 3.69e-01 96.9% 67.7%
5035139 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.54 44.0 3.43e-01 90.6% 100.0%
5035395 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.54 43.0 3.22e-01 89.1% 48.8%
4999286 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.53 45.0 3.29e-01 96.9% 33.9%
5058268 101.1.2.54 alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.53 39.0 3.16e-01 87.5% 42.6%
3740624 101.1.2.111 alpha arrays › HTH › HTH › winged helix domain › RQC 0.53 38.0 3.24e-01 82.8% 84.8%
3634662 327.11.2.19 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_11 0.52 42.0 3.76e-01 93.8% 62.2%
3701433 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 37.0 3.21e-01 82.8% 93.3%
3724623 109.4.1.356 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.51 45.0 2.68e-01 100.0% 22.5%
4027654 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.51 39.0 3.68e-01 96.9% 68.0%
4403516 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.51 43.0 3.52e-01 96.9% 86.3%
4945806 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.51 43.0 3.55e-01 96.9% 77.5%
3739592 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.51 41.0 3.85e-01 87.5% 73.3%
4993906 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.51 43.0 3.43e-01 96.9% 76.4%
4937181 305.1.1.2 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 0.50 42.0 3.86e-01 89.1% 100.0%