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NC_004348.1__NP_720313.1__ST64Tp39__00039

Bact-Vir

NC_004348.1__NP_720313.1__ST64Tp39__00039

Identity

Accession:
NC_004348 ↗
Kingdom:
phage

Quality

86.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lederbergvirus› Salmonella_phage_ST64T

TaxID: 2905963

Cluster

View cluster (19 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-90
PDB
Domain cluster: rep: MK290737.1__AZV02083.1__Arno162_43__00043__D9-82
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jngA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.78 50.0 5.19e-01 95.1% 70.1%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 48.0 5.60e-01 93.9% 93.3%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 49.0 5.71e-01 93.9% 98.3%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 43.0 4.82e-01 97.6% 78.1%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 49.0 5.64e-01 93.9% 98.3%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.70 45.0 4.29e-01 98.8% 55.1%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 48.0 5.08e-01 95.1% 83.3%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 47.0 5.23e-01 95.1% 93.8%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 50.0 5.30e-01 98.8% 90.5%
4oelB00 2.40.50.170 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Cysteine proteinases. Chain C 0.63 42.0 4.49e-01 89.0% 79.7%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 49.0 5.13e-01 100.0% 90.7%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 46.0 5.14e-01 97.6% 97.0%
1ng2A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 32.0 4.27e-01 76.8% 95.5%
4mdwA00 2.30.30.1210 Mainly Beta › Roll › SH3 type barrels. › Domain of unknown function DUF1541 0.59 48.0 4.04e-01 90.2% 82.9%
1mv3A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 47.0 4.95e-01 92.7% 95.9%
3co8A01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.58 43.0 3.59e-01 79.3% 54.7%
1v29B02 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.58 52.0 4.92e-01 96.3% 86.6%
4lusB01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.58 43.0 3.60e-01 80.5% 56.4%
2ew0A00 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.52 46.0 3.65e-01 100.0% 94.9%
4bg7A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.51 31.0 2.98e-01 79.3% 51.0%
6ruiB07 2.40.50.150 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain 0.51 39.0 3.42e-01 82.9% 96.8%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.51 42.0 3.46e-01 95.1% 94.6%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4172306 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.72 47.0 4.47e-01 97.6% 57.9%
5068429 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.67 42.0 3.90e-01 93.9% 50.0%
3812766 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.65 47.0 5.10e-01 93.9% 88.6%
3607981 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 47.0 4.99e-01 96.3% 83.8%
4251253 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.64 46.0 4.27e-01 100.0% 59.0%
4031435 4.1.1.143 ↗ beta barrels › SH3 › SH3 › SH3 › TagH_SH3-like 0.64 44.0 4.82e-01 95.1% 89.2%
3806777 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.64 48.0 5.00e-01 100.0% 86.7%
3495649 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 54.0 5.40e-01 95.1% 96.5%
4214954 1.1.7.6 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ala_racemase_C 0.57 43.0 3.78e-01 80.5% 70.2%
5037772 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.57 47.0 4.23e-01 100.0% 65.5%
3411042 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.55 38.0 4.31e-01 92.7% 96.7%
3729690 4.1.1.170 ↗ beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind 0.53 49.0 4.62e-01 98.8% 87.4%
3254941 4.18.1.1 ↗ beta barrels › SH3 › Plus3 › Plus3 › Plus-3 0.53 47.0 3.96e-01 95.1% 70.8%
3183093 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 47.0 3.90e-01 97.6% 94.3%