←Back to structures
NC_004462.2__NP_777328.1__AV953_gp10__00010
Bact-VirNC_004462.2__NP_777328.1__AV953_gp10__00010
Identity
- Accession:
- NC_004462 ↗
- Kingdom:
- phage
Quality
83.2
mean pLDDT
Taxonomy
Helvetiavirae›
Dividoviricota›
Laserviricetes›
Halopanivirales›
Matsushitaviridae›
Hukuchivirus›
Thermus_virus_IN93
TaxID: 1714273
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-66
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3i6iA02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.57 | 50.0 | 3.90e-01 | 100.0% | 76.9% |
| 2mqkA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.57 | 39.0 | 3.67e-01 | 73.1% | 60.0% |
| 2wwwC01 | 1.20.5.170 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.56 | 45.0 | 4.60e-01 | 100.0% | 92.3% |
| 3c2gA02 | 1.10.10.1630 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sys-1 C-terminal domain-like | 0.56 | 47.0 | 4.38e-01 | 96.2% | 98.5% |
| 3s0aA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.54 | 45.0 | 3.50e-01 | 94.2% | 80.7% |
| 3dxlA02 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.54 | 47.0 | 3.43e-01 | 100.0% | 34.9% |
| 4d7rA01 | 1.10.220.20 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › | 0.53 | 41.0 | 3.65e-01 | 90.4% | 81.7% |
| 3pxpA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.51 | 39.0 | 3.49e-01 | 100.0% | 76.3% |
| 2klqA00 | 1.20.58.870 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 41.0 | 3.26e-01 | 92.3% | 57.9% |
| 4wp2A00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.50 | 35.0 | 3.40e-01 | 90.4% | 65.6% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4972789 | 650.1.1.27 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › Fusello_VP2_Capsid | 0.87 | 77.0 | 7.20e-01 | 100.0% | 93.8% |
| 5058184 | 7516.1.1.10 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › CofC | 0.74 | 63.0 | 4.03e-01 | 98.1% | 93.1% |
| 3968369 | 4168.1.1.1 ↗ | alpha duplicates or obligate multimers › HAMP domain › HAMP domain › HAMP domain › HAMP | 0.68 | 58.0 | 5.51e-01 | 92.3% | 85.0% |
| 3611212 | 109.4.1.326 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RICTOR_M | 0.66 | 52.0 | 3.26e-01 | 88.5% | 43.4% |
| 4502969 | 2004.1.1.59 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE | 0.65 | 45.0 | 2.99e-01 | 73.1% | 23.4% |
| 3304276 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.65 | 58.0 | 3.25e-01 | 100.0% | 15.6% |
| 4605395 | 2004.1.1.59 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE | 0.64 | 44.0 | 2.99e-01 | 71.2% | 25.5% |
| 4575832 | 2004.1.1.59 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE | 0.64 | 45.0 | 3.04e-01 | 75.0% | 24.6% |
| 4178123 | 2004.1.1.59 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE | 0.63 | 47.0 | 3.19e-01 | 80.8% | 24.0% |
| 3945494 | 2004.1.1.59 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE | 0.62 | 46.0 | 3.04e-01 | 80.8% | 23.2% |
| 4668968 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.62 | 43.0 | 2.90e-01 | 73.1% | 24.0% |
| 4402246 | 2004.1.1.59 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE | 0.62 | 44.0 | 2.93e-01 | 76.9% | 21.3% |
| 4539403 | 2004.1.1.59 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE | 0.61 | 45.0 | 3.04e-01 | 80.8% | 24.3% |
| 4079791 | 2004.1.1.59 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE | 0.61 | 44.0 | 3.00e-01 | 76.9% | 24.6% |
| 3417019 | 109.4.1.298 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › VPS15-like_hel | 0.61 | 52.0 | 3.49e-01 | 94.2% | 57.9% |
| 4166882 | 2004.1.1.59 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE | 0.60 | 43.0 | 2.94e-01 | 76.9% | 23.4% |
| 3786373 | 2004.1.1.59 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE | 0.60 | 45.0 | 3.03e-01 | 88.5% | 19.6% |
| 4555376 | 2004.1.1.59 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE | 0.60 | 44.0 | 3.01e-01 | 80.8% | 24.6% |
| 3721237 | 109.4.1.1255 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 | 0.59 | 52.0 | 3.51e-01 | 100.0% | 44.6% |
| 3587347 | 2004.1.1.59 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE | 0.59 | 43.0 | 2.96e-01 | 80.8% | 25.6% |
| 4301843 | 2004.1.1.59 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE | 0.59 | 43.0 | 2.96e-01 | 80.8% | 26.2% |
| 3210004 | 4156.1.1.0 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like | 0.58 | 46.0 | 2.58e-01 | 86.5% | 9.9% |
| 4093937 | 2004.1.1.59 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE | 0.56 | 41.0 | 2.85e-01 | 80.8% | 26.2% |
| 4978586 | 604.9.1.0 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 | 0.56 | 45.0 | 3.74e-01 | 100.0% | 89.1% |
| 4133406 | 2004.1.1.59 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE | 0.56 | 42.0 | 2.86e-01 | 88.5% | 21.5% |
| 4642905 | 2004.1.1.59 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE | 0.56 | 45.0 | 3.09e-01 | 100.0% | 24.6% |
| 4642886 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.56 | 45.0 | 4.24e-01 | 100.0% | 73.8% |
| 4348800 | 2004.1.1.59 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE | 0.55 | 41.0 | 2.82e-01 | 88.5% | 21.5% |
| 4623710 | 2004.1.1.59 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE | 0.54 | 48.0 | 3.18e-01 | 100.0% | 57.2% |
| 4437663 | 2004.1.1.59 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE | 0.54 | 46.0 | 3.15e-01 | 100.0% | 52.8% |
| 4960513 | 6049.1.1.0 ↗ | alpha bundles › PH0832-like › PH0832-like › PH0832-like | 0.53 | 46.0 | 4.14e-01 | 100.0% | 77.3% |
| 4187779 | 2004.1.1.59 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE | 0.53 | 46.0 | 3.12e-01 | 100.0% | 52.8% |
| 5078761 | 101.1.2.92 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_11 | 0.52 | 38.0 | 3.19e-01 | 88.5% | 65.2% |
| 4251656 | 2004.1.1.59 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE | 0.52 | 42.0 | 2.86e-01 | 100.0% | 66.4% |
| 4358908 | 2004.1.1.59 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE | 0.52 | 40.0 | 2.80e-01 | 100.0% | 23.3% |
| 3292650 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.52 | 40.0 | 2.56e-01 | 94.2% | 50.5% |
| 5028897 | 2004.1.1.59 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE | 0.51 | 41.0 | 2.93e-01 | 100.0% | 64.8% |
| 4139980 | 2004.1.1.59 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE | 0.50 | 40.0 | 2.83e-01 | 100.0% | 61.9% |