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NC_004585.1__NP_795451.1__SpyM3_0956__00023

Bact-Vir

NC_004585.1__NP_795451.1__SpyM3_0956__00023

Identity

Accession:
NC_004585 ↗
Kingdom:
phage

Quality

93.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 43-137
PDB
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p5kA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 42.0 5.03e-01 73.7% 98.4%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 48.0 4.66e-01 78.9% 71.4%
1p6rA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 42.0 4.50e-01 70.5% 78.0%
2eshA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 47.0 4.44e-01 77.9% 69.3%
6az1a00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 43.0 4.79e-01 82.1% 91.7%
2xzn800 3.30.63.20 Alpha Beta › 2-Layer Sandwich › Guanylate Kinase phosphate binding domain › 0.63 46.0 4.71e-01 84.2% 78.5%
7xc2A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 47.0 4.56e-01 78.9% 90.6%
4rayA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 43.0 4.49e-01 70.5% 77.6%
4ijaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 40.0 4.74e-01 73.7% 98.4%
4asnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 42.0 4.34e-01 70.5% 73.3%
3f6oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 38.0 3.96e-01 70.5% 64.8%
3gw2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 39.0 3.98e-01 73.7% 66.7%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 42.0 4.36e-01 73.7% 85.4%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 39.0 3.90e-01 70.5% 63.4%
4rs8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 38.0 4.06e-01 72.6% 73.8%
2zkzC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 37.0 3.83e-01 70.5% 67.8%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 40.0 3.93e-01 73.7% 67.0%
3fx3B02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 39.0 3.93e-01 70.5% 71.6%
3fxtA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 35.0 3.64e-01 72.6% 65.6%
2b0lC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 39.0 3.93e-01 77.9% 71.3%
2bv6A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 44.0 3.93e-01 84.2% 73.5%
3cuqA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 37.0 3.96e-01 71.6% 80.0%
2bgcA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 41.0 4.09e-01 77.9% 85.1%
1r1uB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 39.0 3.96e-01 74.7% 74.2%
4gyiA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 39.0 3.96e-01 74.7% 76.3%
1p4xA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 41.0 3.76e-01 81.1% 67.7%
2qvoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 40.0 4.23e-01 81.1% 89.7%
1u5tA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 35.0 3.89e-01 71.6% 90.1%
3jamK00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 40.0 4.08e-01 82.1% 96.9%
2jscB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 36.0 3.84e-01 74.7% 81.2%
2jhjA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.53 37.0 3.43e-01 71.6% 90.8%
3cueB00 3.30.1380.20 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 0.53 38.0 3.23e-01 76.8% 80.2%
5eriA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 44.0 3.78e-01 90.5% 75.2%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 38.0 3.84e-01 81.1% 77.4%
1u7kA00 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.52 37.0 3.43e-01 75.8% 90.8%
6uvuA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 39.0 3.86e-01 82.1% 73.1%
4bpe700 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 39.0 3.88e-01 81.1% 90.1%
2a5yC03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 41.0 3.96e-01 88.4% 76.6%
3hmzA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 36.0 2.93e-01 73.7% 96.9%
3cjnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 42.0 3.68e-01 89.5% 75.3%
ECOD (75)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5002459 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.96 74.0 8.36e-01 81.1% 100.0%
5017952 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.96 73.0 8.32e-01 80.0% 100.0%
3262891 101.1.2.79 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_I_A49 0.72 46.0 5.42e-01 73.7% 95.4%
3876886 59.1.1.18 beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › RPC5, RPC5_C 0.69 49.0 3.49e-01 74.7% 29.8%
4676441 101.1.2.785 alpha arrays › HTH › HTH › winged helix domain › HTH_13 0.67 42.0 4.75e-01 74.7% 84.3%
5037932 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 45.0 4.59e-01 80.0% 71.3%
4188749 101.1.2.20 alpha arrays › HTH › HTH › winged helix domain › Arg_repressor 0.66 44.0 4.75e-01 75.8% 81.2%
4936304 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 46.0 4.81e-01 72.6% 83.5%
3468855 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.64 50.0 4.31e-01 84.2% 81.9%
5040293 101.1.2.934 alpha arrays › HTH › HTH › winged helix domain › HVO_A0261_N 0.64 43.0 3.96e-01 74.7% 53.3%
5046890 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 44.0 3.86e-01 70.5% 51.4%
3429345 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.63 51.0 3.47e-01 88.4% 47.8%
3361668 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.63 50.0 4.10e-01 85.3% 73.7%
3403298 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 48.0 4.13e-01 80.0% 52.4%
3645945 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.63 51.0 3.20e-01 88.4% 37.8%
3440716 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.62 46.0 4.22e-01 78.9% 74.6%
3662216 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 50.0 3.59e-01 87.4% 71.2%
3676524 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.62 48.0 4.36e-01 83.2% 91.5%
3458999 101.1.2.73 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82 0.62 43.0 4.34e-01 71.6% 75.8%
4979487 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 48.0 4.18e-01 81.1% 60.0%
3667879 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.62 47.0 4.61e-01 81.1% 91.4%
4958724 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.62 46.0 4.50e-01 78.9% 72.4%
3831895 101.1.2.312 alpha arrays › HTH › HTH › winged helix domain › MSC 0.62 47.0 3.38e-01 81.1% 39.3%
3351739 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.61 48.0 4.03e-01 84.2% 79.4%
4010961 101.1.2.520 alpha arrays › HTH › HTH › winged helix domain › DUF7779 0.61 48.0 4.11e-01 85.3% 83.0%
3953589 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.61 40.0 3.95e-01 70.5% 62.6%
3676148 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.61 47.0 4.34e-01 83.2% 88.0%
3420624 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.61 45.0 4.39e-01 77.9% 81.9%
5046780 101.1.2.44 alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S25 0.61 41.0 4.20e-01 76.8% 73.3%
5025922 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.61 40.0 4.29e-01 72.6% 80.0%
4013608 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 43.0 4.07e-01 74.7% 78.3%
3314406 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.60 46.0 4.27e-01 83.2% 86.4%
3310294 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.60 47.0 3.90e-01 84.2% 78.8%
3442533 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.60 46.0 4.30e-01 83.2% 86.7%
3359983 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.60 47.0 4.53e-01 85.3% 95.5%
3439148 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.60 47.0 3.87e-01 85.3% 84.0%
4023459 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 42.0 4.50e-01 73.7% 87.5%
3610774 168.1.1.1 alpha arrays › Sec7 domain › Sec7 domain › Sec7 domain › Sec7 0.59 42.0 3.17e-01 73.7% 37.4%
3669754 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 49.0 4.33e-01 90.5% 82.1%
5049162 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.59 50.0 4.16e-01 93.7% 84.1%
3463151 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 45.0 3.98e-01 83.2% 75.2%
3690414 101.1.2.359 alpha arrays › HTH › HTH › winged helix domain › GPIID_WHD 0.59 49.0 3.96e-01 91.6% 84.3%
3610178 168.1.1.1 alpha arrays › Sec7 domain › Sec7 domain › Sec7 domain › Sec7 0.58 43.0 3.24e-01 76.8% 55.7%
3447913 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.58 45.0 4.35e-01 83.2% 93.6%
3726126 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 47.0 3.96e-01 88.4% 77.0%
3675610 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.58 44.0 4.32e-01 82.1% 82.9%
3519313 101.1.2.284 alpha arrays › HTH › HTH › winged helix domain › WAC_Acf1_DNA_bd 0.58 43.0 4.39e-01 82.1% 80.0%
5031727 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.58 39.0 3.98e-01 70.5% 70.5%
4022828 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 45.0 4.14e-01 84.2% 91.2%
3645601 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.57 43.0 3.99e-01 81.1% 69.6%
3979431 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.57 44.0 3.92e-01 86.3% 68.7%
3960412 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 47.0 4.15e-01 91.6% 72.9%
4986510 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.56 47.0 4.02e-01 90.5% 78.0%
4992669 101.1.2.39 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.56 42.0 4.54e-01 81.1% 95.0%
5046626 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.56 45.0 3.88e-01 88.4% 69.0%
3287283 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 44.0 4.22e-01 86.3% 75.5%
3434870 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.56 39.0 4.23e-01 73.7% 100.0%
3922802 101.1.2.506 alpha arrays › HTH › HTH › winged helix domain › HTH_NWD1 0.56 44.0 4.08e-01 84.2% 90.8%
3929910 101.1.2.507 alpha arrays › HTH › HTH › winged helix domain › HTH_TANC1 0.55 46.0 3.93e-01 90.5% 92.9%
4170959 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.55 35.0 4.10e-01 75.8% 100.0%
4013317 101.1.2.359 alpha arrays › HTH › HTH › winged helix domain › GPIID_WHD 0.55 44.0 3.77e-01 88.4% 78.1%
3951258 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.55 45.0 3.95e-01 91.6% 69.3%
4990701 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.55 46.0 4.21e-01 92.6% 90.0%
5067817 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 43.0 4.10e-01 84.2% 73.6%
3921946 101.1.2.507 alpha arrays › HTH › HTH › winged helix domain › HTH_TANC1 0.55 44.0 3.82e-01 89.5% 91.6%
3627133 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.54 44.0 3.59e-01 90.5% 81.6%
3533128 101.1.2.506 alpha arrays › HTH › HTH › winged helix domain › HTH_NWD1 0.54 42.0 4.05e-01 85.3% 90.9%
3718665 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 38.0 3.96e-01 74.7% 87.1%
4954533 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 42.0 4.38e-01 86.3% 97.6%
3704488 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 41.0 3.86e-01 84.2% 71.7%
4998929 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.52 37.0 3.98e-01 83.2% 87.5%
4020983 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 40.0 3.83e-01 87.4% 90.8%
5055105 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 33.0 3.62e-01 85.3% 88.6%
4026533 264.1.1.7 beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS 0.50 37.0 2.99e-01 80.0% 97.5%
3768253 168.1.1.1 alpha arrays › Sec7 domain › Sec7 domain › Sec7 domain › Sec7 0.50 42.0 3.37e-01 92.6% 69.2%