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NC_004587.1__NP_795548.1__SpyM3_1259__00008

Bact-Vir

NC_004587.1__NP_795548.1__SpyM3_1259__00008

Identity

Accession:
NC_004587 ↗
Kingdom:
phage

Quality

93.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_315.4

TaxID: 198541

Cluster

View cluster (11 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-64
PDB
Domain cluster: rep: OQ067477.1__WCD44203.1__Lumi_064__00064__D6-72
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13619.12 best KTSC 42.4 6.30e-11 80.3% 67.2%
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4z32A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.71 49.0 4.20e-01 73.8% 45.8%
2ogqA01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.69 44.0 3.43e-01 100.0% 31.7%
2gdqA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.68 56.0 4.69e-01 91.8% 92.5%
2d9xA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 45.0 3.73e-01 70.5% 41.8%
4v0bA00 3.30.720.210 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.66 46.0 4.58e-01 72.1% 69.8%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.66 41.0 3.84e-01 98.4% 52.8%
1y13A00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.66 43.0 3.13e-01 75.4% 24.5%
2rloA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 44.0 3.50e-01 70.5% 53.9%
1x05A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 45.0 3.57e-01 73.8% 41.9%
2auwA01 3.30.2020.10 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › NE0471-like N-terminal domain 0.64 51.0 4.71e-01 90.2% 96.3%
2z4hA01 2.40.128.300 Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain 0.63 43.0 4.03e-01 72.1% 93.7%
1plsA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 44.0 3.63e-01 73.8% 44.2%
2hesX00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 51.0 3.27e-01 91.8% 25.3%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.62 51.0 4.41e-01 91.8% 97.9%
2ymsC00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.61 48.0 4.62e-01 91.8% 88.0%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.61 42.0 3.46e-01 96.7% 40.4%
1xipA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 48.0 3.03e-01 91.8% 31.6%
3n6rA03 3.30.700.30 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › 0.60 47.0 3.68e-01 100.0% 39.1%
3v7dD02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 49.0 3.09e-01 93.4% 19.9%
6g6qA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 48.0 3.75e-01 91.8% 47.2%
4g7nA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.60 52.0 4.20e-01 100.0% 54.5%
4o2wD00 2.130.10.30 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II 0.60 48.0 3.02e-01 91.8% 26.4%
4dnuA00 2.130.10.30 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II 0.60 48.0 3.00e-01 91.8% 25.0%
2ymsB00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.60 47.0 4.56e-01 93.4% 93.2%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.59 45.0 4.41e-01 88.5% 82.6%
4rs6A01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.59 44.0 3.53e-01 82.0% 41.5%
4l1mB00 2.130.10.30 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II 0.58 47.0 2.95e-01 91.8% 26.1%
4bjzA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 43.0 3.11e-01 78.7% 55.4%
4ghbA00 2.40.160.190 Mainly Beta › Beta Barrel › Porin › 0.58 46.0 3.04e-01 86.9% 62.4%
3gasA01 3.20.180.10 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like 0.57 44.0 4.07e-01 85.2% 92.4%
2joiA00 3.30.310.190 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.57 37.0 3.25e-01 100.0% 42.7%
2v4jB01 3.30.70.3340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 48.0 3.68e-01 91.8% 51.5%
2vouB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 44.0 2.92e-01 83.6% 65.8%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 48.0 4.26e-01 95.1% 70.1%
2rcnA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 42.0 4.22e-01 90.2% 80.3%
3d1cA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 39.0 3.17e-01 73.8% 97.4%
2d0bA01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.55 43.0 3.76e-01 83.6% 60.7%
2cduA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 40.0 2.99e-01 78.7% 81.5%
3d0fA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 43.0 4.08e-01 88.5% 87.7%
1b37A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 43.0 2.86e-01 85.2% 84.2%
3ng7X01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 40.0 2.74e-01 78.7% 82.8%
4x30A02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.54 44.0 3.46e-01 95.1% 65.3%
4iv9A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 43.0 2.82e-01 86.9% 68.1%
3ecfA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 48.0 3.77e-01 100.0% 76.6%
2lioA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 39.0 3.08e-01 98.4% 35.3%
4k22B01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 43.0 2.79e-01 85.2% 72.2%
2q0lA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 42.0 2.97e-01 86.9% 81.8%
3o0hB02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 39.0 3.19e-01 80.3% 96.6%
7mhwA01 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.52 43.0 3.81e-01 93.4% 64.0%
3i6dA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 41.0 3.04e-01 86.9% 75.8%
3f7wA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 45.0 3.96e-01 100.0% 100.0%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4245376 3933.1.1.1 ↗ a+b two layers › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 › KTSC 0.94 80.0 8.15e-01 90.2% 98.3%
1489664 3933.1.1.1 ↗ a+b two layers › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 › KTSC 0.94 89.0 8.41e-01 100.0% 92.9%
4973393 3933.1.1.1 ↗ a+b two layers › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 › KTSC 0.94 88.0 8.14e-01 100.0% 94.7%
4501642 3933.1.1.1 ↗ a+b two layers › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 › KTSC 0.91 84.0 8.04e-01 100.0% 94.3%
3435779 809.2.1.0 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.88 48.0 5.09e-01 91.8% 61.8%
5077594 56.2.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.78 52.0 5.44e-01 78.7% 76.4%
3187834 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.75 46.0 3.62e-01 100.0% 31.7%
5047735 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.75 50.0 3.73e-01 70.5% 28.2%
4862553 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.75 40.0 3.33e-01 75.4% 32.0%
5058747 56.2.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.72 50.0 5.12e-01 85.2% 75.9%
4982571 56.2.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.71 49.0 5.07e-01 86.9% 75.9%
4987919 56.2.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.71 50.0 5.14e-01 85.2% 77.6%
4933001 3933.1.1.0 ↗ a+b two layers › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 0.68 56.0 5.25e-01 91.8% 77.3%
3510696 5.1.4.149 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WDR54 0.68 56.0 3.81e-01 91.8% 39.6%
3524527 220.1.1.33 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_8 0.67 45.0 3.78e-01 70.5% 43.6%
3704944 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.66 45.0 3.85e-01 70.5% 62.0%
3993048 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.66 45.0 3.68e-01 70.5% 49.1%
3634343 5.1.5.93 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_EMC1_N 0.65 54.0 3.22e-01 93.4% 18.8%
4029125 5.1.4.21 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Pep3_Vps18 0.65 53.0 3.29e-01 91.8% 22.8%
5019463 12.3.1.74 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › GDE_N 0.64 54.0 3.53e-01 93.4% 30.6%
3057024 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 52.0 3.18e-01 93.4% 17.5%
3924808 719.2.1.0 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like 0.63 52.0 4.73e-01 90.2% 98.8%
3742689 5.1.4.661 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR36-Utp21_1st 0.62 50.0 3.21e-01 91.8% 36.5%
3634583 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.62 46.0 3.46e-01 100.0% 34.3%
4939428 56.2.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.62 49.0 5.02e-01 86.9% 98.3%
3685742 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 50.0 3.05e-01 93.4% 16.4%
4773067 5.1.4.40 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.61 48.0 4.62e-01 91.8% 88.0%
3408563 5.1.4.661 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR36-Utp21_1st 0.61 49.0 3.22e-01 91.8% 24.0%
3672647 5.1.4.297 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, NBCH_WD40 0.61 49.0 2.99e-01 91.8% 22.3%
3719566 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 48.0 3.15e-01 91.8% 26.7%
4143716 241.2.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.60 42.0 3.45e-01 100.0% 40.9%
3392883 5.1.4.417 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › KNTC1_N 0.59 48.0 3.02e-01 93.4% 38.4%
3806989 5.1.5.66 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_1 0.59 48.0 3.15e-01 93.4% 30.9%
4468946 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.59 43.0 2.96e-01 77.0% 46.5%
3314585 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.59 47.0 3.23e-01 93.4% 29.4%
3604573 5.1.4.40 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.58 46.0 2.72e-01 93.4% 13.1%
3818556 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.58 46.0 3.01e-01 93.4% 24.9%
4055253 5.1.4.7 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1 0.58 47.0 2.95e-01 93.4% 26.8%
3739038 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 50.0 3.80e-01 98.4% 52.4%
3970136 241.2.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.57 41.0 3.44e-01 100.0% 44.8%
4323062 2003.1.2.99 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, FAD_binding_3 0.57 46.0 2.80e-01 86.9% 73.0%
4000029 5.1.4.139 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_2 0.57 52.0 3.22e-01 100.0% 41.8%
3384946 5.1.10.7 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › RCC1, RCC1_2 0.56 42.0 3.37e-01 85.2% 51.9%
4018697 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.56 43.0 2.72e-01 83.6% 55.6%
3233394 5.1.4.255 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2, WD40_RLD 0.55 43.0 2.78e-01 93.4% 29.2%
5036086 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 42.0 3.89e-01 85.2% 86.3%
3468141 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.54 42.0 2.98e-01 83.6% 51.4%
5031334 298.1.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.54 40.0 3.10e-01 100.0% 35.3%
4943983 5.1.4.87 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › LVIVD 0.53 47.0 2.83e-01 100.0% 26.5%
3442219 2003.1.2.17 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Amino_oxidase 0.52 41.0 2.45e-01 83.6% 45.0%
4289599 4100.1.1.5 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB-like_2 0.52 35.0 3.45e-01 91.8% 62.9%
4948974 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.52 42.0 3.18e-01 86.9% 78.2%
3715951 241.2.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.51 44.0 3.47e-01 100.0% 46.4%
2696975 6129.1.1.0 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family 0.51 40.0 2.90e-01 90.2% 87.3%
3515770 5.1.4.258 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2 0.50 45.0 2.88e-01 100.0% 34.9%