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NC_004588.1__NP_795656.1__SpyM3_1303__00052
Bact-VirNC_004588.1__NP_795656.1__SpyM3_1303__00052
Identity
- Accession:
- NC_004588 ↗
- Kingdom:
- phage
Quality
77.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 36-68
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4dovA00 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.63 | 45.0 | 3.15e-01 | 100.0% | 68.8% |
| 2czrA01 | 3.40.1350.70 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › TBP-interacting protein, N-terminal domain | 0.60 | 45.0 | 3.43e-01 | 100.0% | 42.5% |
| 1br9A01 | 3.90.370.10 | Alpha Beta › Alpha-Beta Complex › Tissue inhibitor of metalloproteinase-1. Chain B, domain 1 › Tissue inhibitor of metalloproteinase-1. Chain B, domain 1 | 0.54 | 41.0 | 3.32e-01 | 100.0% | 51.2% |
| 2gzaB02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 38.0 | 2.46e-01 | 84.8% | 80.3% |
| 3klkA01 | 2.10.270.10 | Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding | 0.53 | 41.0 | 2.82e-01 | 100.0% | 77.0% |
| 1np7B01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.53 | 38.0 | 2.67e-01 | 87.9% | 60.6% |
| 3pm9A01 | 3.30.43.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 | 0.52 | 34.0 | 2.94e-01 | 100.0% | 72.0% |
| 4amcA01 | 2.30.30.20 | Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain | 0.50 | 34.0 | 3.18e-01 | 97.0% | 41.3% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5012452 | 2004.1.1.1222 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF27713 | 0.64 | 44.0 | 2.78e-01 | 72.7% | 12.8% |
| 3597442 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.57 | 43.0 | 2.92e-01 | 100.0% | 26.3% |
| 4970256 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.55 | 42.0 | 2.59e-01 | 93.9% | 49.7% |
| 1109540 | 2.3.1.1 ↗ | beta barrels › OB-fold › TIMP-like › TIMP-like › TIMP | 0.54 | 43.0 | 2.82e-01 | 100.0% | 76.9% |
| 3272195 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.54 | 37.0 | 2.92e-01 | 93.9% | 68.2% |
| 3707544 | 1143.1.1.0 ↗ | beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit | 0.54 | 41.0 | 3.57e-01 | 100.0% | 47.1% |
| 3962010 | 101.1.2.863 ↗ | alpha arrays › HTH › HTH › winged helix domain › AbiEi_1 | 0.51 | 40.0 | 2.95e-01 | 100.0% | 32.7% |