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NC_004680.2__NP_817403.1__PBI_CHE8_65__00066

Bact-Vir

NC_004680.2__NP_817403.1__PBI_CHE8_65__00066

Identity

Accession:
NC_004680 ↗
Kingdom:
phage

Quality

89.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Cheoctovirus› Mycobacterium_phage_Che8

TaxID: 2907829

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 150-214
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pw4A00 1.10.3300.10 Mainly Alpha › Orthogonal Bundle › Jann2411-like fold › Jann2411-like domain 0.70 55.0 3.94e-01 84.6% 54.6%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 39.0 3.03e-01 72.3% 50.4%
2nnnC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 39.0 3.05e-01 72.3% 68.2%
5eyaF00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.55 32.0 3.11e-01 70.8% 48.7%
3u37A02 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.54 37.0 2.48e-01 70.8% 87.9%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3394297 198.1.1.4 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › DUF3456 0.65 32.0 2.50e-01 75.4% 22.2%
4618205 604.1.1.150 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF28954 0.62 41.0 3.33e-01 84.6% 36.7%
3246644 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.59 43.0 2.76e-01 76.9% 34.2%
4351646 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.53 39.0 2.77e-01 76.9% 31.4%
2790593 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.53 45.0 3.43e-01 93.8% 57.1%
D2 medium residues 18-90
PDB
Domain cluster: rep: NC_042336.1__YP_009638413.1__FGG38_gp52__00052__D21-92
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02467.22 best Whib 90.0 1.60e-25 87.7% 100.0%
D3 medium residues 103-142
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5lnkJ01 1.20.120.1200 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ 0.66 46.0 3.08e-01 77.5% 21.3%
8d3mA02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.64 52.0 3.30e-01 95.0% 65.0%
2wyoC01 3.30.1490.250 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.62 48.0 3.49e-01 100.0% 31.7%
2doaA00 1.10.10.2670 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › E3 ubiquitin-protein ligase 0.61 42.0 3.16e-01 70.0% 99.0%
4frfA00 3.30.470.160 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Inositol polyphosphate kinase 0.59 44.0 2.77e-01 77.5% 97.7%
5k5iA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.54 41.0 3.74e-01 82.5% 69.2%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3485009 386.1.1.24 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_4 0.69 50.0 4.27e-01 80.0% 67.1%
3638239 386.1.1.360 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met, zf-C2H2_6 0.66 45.0 2.98e-01 70.0% 25.0%
3791983 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.62 41.0 3.75e-01 70.0% 61.8%
3571301 386.1.1.112 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2HC_2 0.62 49.0 3.73e-01 90.0% 83.0%
3629866 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.62 44.0 4.02e-01 77.5% 63.6%
4024335 2003.1.5.54 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_10 0.60 48.0 2.77e-01 90.0% 56.5%
3221969 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.59 43.0 3.52e-01 77.5% 50.7%
3578095 304.28.1.5 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › NPC1_MLD 0.58 41.0 3.06e-01 80.0% 45.8%
3910229 386.1.1.133 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2+zf-C2H2_4 0.58 40.0 3.75e-01 82.5% 58.0%
3413043 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.54 41.0 3.52e-01 97.5% 50.8%
3902566 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.54 38.0 3.42e-01 90.0% 54.5%
3841290 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.52 39.0 3.67e-01 92.5% 81.8%