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NC_004681.1__NP_817533.1__CJW1_gp84__00083
Bact-VirNC_004681.1__NP_817533.1__CJW1_gp84__00083
Identity
- Accession:
- NC_004681 ↗
- Kingdom:
- phage
Quality
67.1
mean pLDDT
Taxonomy
TaxID: 2907830
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 48-102
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1io0A00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.62 | 44.0 | 3.19e-01 | 74.5% | 71.7% |
| 2gb7D00 | 3.40.91.80 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.56 | 49.0 | 3.10e-01 | 100.0% | 54.5% |
| 2yhsA01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.51 | 42.0 | 3.54e-01 | 94.5% | 79.4% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3283617 | 1022.2.1.0 ↗ | alpha arrays › 4Fe-4S binding domain in Dna2 › 4Fe-4S protein WhiB1 › 4Fe-4S protein WhiB1 | 0.83 | 69.0 | 6.58e-01 | 92.7% | 90.8% |
| 3027027 | 1022.2.1.1 ↗ | alpha arrays › 4Fe-4S binding domain in Dna2 › 4Fe-4S protein WhiB1 › 4Fe-4S protein WhiB1 › Whib | 0.81 | 71.0 | 6.17e-01 | 100.0% | 75.3% |
| 2988223 | 1022.2.1.1 ↗ | alpha arrays › 4Fe-4S binding domain in Dna2 › 4Fe-4S protein WhiB1 › 4Fe-4S protein WhiB1 › Whib | 0.78 | 68.0 | 5.93e-01 | 100.0% | 67.1% |
| 3286828 | 1022.2.1.1 ↗ | alpha arrays › 4Fe-4S binding domain in Dna2 › 4Fe-4S protein WhiB1 › 4Fe-4S protein WhiB1 › Whib | 0.74 | 65.0 | 6.19e-01 | 100.0% | 87.7% |
| 2724064 | 1022.2.1.1 ↗ | alpha arrays › 4Fe-4S binding domain in Dna2 › 4Fe-4S protein WhiB1 › 4Fe-4S protein WhiB1 › Whib | 0.73 | 62.0 | 5.51e-01 | 96.4% | 71.2% |
| 3475471 | 109.1.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C | 0.64 | 52.0 | 4.02e-01 | 96.4% | 47.9% |
| 4030559 | 650.1.1.0 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain | 0.60 | 53.0 | 4.80e-01 | 100.0% | 95.9% |
| 3272971 | 4299.1.1.1 ↗ | alpha arrays › BSD domain › BSD domain › BSD domain › BSD | 0.57 | 44.0 | 3.94e-01 | 89.1% | 74.7% |
| 3658585 | 109.4.1.80 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RRN3 | 0.57 | 46.0 | 3.54e-01 | 92.7% | 54.1% |
| 4286580 | 4025.1.1.1 ↗ | alpha complex topology › alpha-helical domain in nickel-iron hydrogenase, large subunit › alpha-helical domain in nickel-iron hydrogenase, large subunit › alpha-helical domain in nickel-iron hydrogenase, large subunit › Complex1_49kDa | 0.54 | 46.0 | 3.08e-01 | 100.0% | 63.5% |