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NC_004686.2__NP_818014.1__PBI_CHE9D_41__00041
Bact-VirNC_004686.2__NP_818014.1__PBI_CHE9D_41__00041
Identity
- Accession:
- NC_004686 ↗
- Kingdom:
- phage
Quality
70.8
mean pLDDT
Taxonomy
TaxID: 2907834
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 51-125
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2af5A02 | 3.90.930.1 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › | 0.66 | 44.0 | 3.58e-01 | 100.0% | 37.7% |
| 3zfnA02 | 2.30.140.40 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Pestivirus Npro endopeptidase C53, interaction domain | 0.65 | 36.0 | 3.99e-01 | 86.7% | 70.2% |
| 8aimG01 | 3.10.450.20 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor | 0.64 | 50.0 | 4.91e-01 | 97.3% | 77.8% |
| 4ntqA00 | 3.10.380.20 | Alpha Beta › Roll › Ribonuclease domain of colicin e3 (Residues 456-551) › Novel toxin 21 (CdiA), C-terminal domain | 0.64 | 40.0 | 3.99e-01 | 100.0% | 60.5% |
| 3oe3C00 | 2.40.128.200 | Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor | 0.64 | 46.0 | 4.35e-01 | 100.0% | 64.8% |
| 2hv2A03 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.62 | 43.0 | 3.43e-01 | 70.7% | 59.1% |
| 2wtzA02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.61 | 46.0 | 3.31e-01 | 81.3% | 46.2% |
| 2k7iA01 | 3.30.160.160 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YegP-like | 0.61 | 35.0 | 4.13e-01 | 86.7% | 87.5% |
| 3fssA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.59 | 41.0 | 3.94e-01 | 72.0% | 91.9% |
| 2hjjA00 | 3.30.160.130 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › ykff protein like domains | 0.58 | 35.0 | 3.74e-01 | 96.0% | 69.7% |
| 6eugA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.57 | 50.0 | 3.26e-01 | 98.7% | 59.7% |
| 6eufA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.57 | 51.0 | 3.36e-01 | 98.7% | 51.9% |
| 1sgoA01 | 3.30.2280.10 | Alpha Beta › 2-Layer Sandwich › copper amine oxidase-like fold › Hypothetical protein (hspc210) | 0.57 | 39.0 | 3.48e-01 | 100.0% | 49.1% |
| 3pijA02 | 2.60.120.560 | Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 | 0.57 | 45.0 | 3.62e-01 | 86.7% | 65.1% |
| 4dsdA00 | 3.40.1420.30 | Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › | 0.56 | 44.0 | 3.75e-01 | 100.0% | 50.8% |
| 4fdtB00 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.56 | 44.0 | 2.85e-01 | 89.3% | 90.2% |
| 3vsfC01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.55 | 48.0 | 3.13e-01 | 98.7% | 48.5% |
| 2kgtA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.55 | 41.0 | 4.18e-01 | 90.7% | 81.9% |
| 2p4oA01 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.55 | 42.0 | 2.98e-01 | 89.3% | 89.7% |
| 5b4wA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 44.0 | 2.81e-01 | 92.0% | 38.0% |
| 1x31A02 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.54 | 42.0 | 2.73e-01 | 88.0% | 51.2% |
| 5flwA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.53 | 47.0 | 3.15e-01 | 100.0% | 51.7% |
| 3a9gA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.53 | 46.0 | 3.03e-01 | 100.0% | 47.9% |
| 2b4wA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.53 | 47.0 | 3.15e-01 | 100.0% | 29.9% |
| 4gs5A01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.51 | 39.0 | 2.85e-01 | 86.7% | 74.2% |
| 2gfaB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 33.0 | 3.51e-01 | 93.3% | 79.0% |
| 3flpA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 45.0 | 3.25e-01 | 100.0% | 36.9% |
| 1tluA00 | 3.60.90.10 | Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase | 0.50 | 37.0 | 3.20e-01 | 98.7% | 49.6% |
| 3h6rA00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.50 | 42.0 | 3.36e-01 | 93.3% | 71.1% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4210618 | 3735.1.1.12 ↗ | beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › RHS_repeat, DUF6531, TEN_YD-shell | 0.79 | 43.0 | 2.60e-01 | 100.0% | 8.8% |
| 5022797 | 12.6.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related | 0.78 | 48.0 | 3.41e-01 | 100.0% | 21.9% |
| 5022781 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.76 | 45.0 | 2.85e-01 | 89.3% | 12.8% |
| 4230707 | 79.1.1.32 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › RHS_repeat, TEN_YD-shell | 0.76 | 43.0 | 2.73e-01 | 100.0% | 12.4% |
| 3952333 | 243.3.1.3 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY | 0.76 | 46.0 | 4.88e-01 | 90.7% | 69.2% |
| 1007197 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.72 | 45.0 | 4.51e-01 | 89.3% | 61.8% |
| 3263745 | 844.1.1.0 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain | 0.65 | 46.0 | 3.55e-01 | 100.0% | 33.5% |
| 3499345 | 4325.1.1.0 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like | 0.64 | 40.0 | 3.86e-01 | 92.0% | 55.3% |
| 4965832 | 246.2.1.9 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos_2 | 0.64 | 49.0 | 3.84e-01 | 85.3% | 100.0% |
| 5072494 | 844.1.1.2 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR | 0.64 | 48.0 | 3.66e-01 | 81.3% | 57.3% |
| 5039633 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.63 | 39.0 | 4.00e-01 | 89.3% | 63.5% |
| 3284714 | 4325.1.1.1 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 | 0.63 | 37.0 | 3.96e-01 | 88.0% | 68.3% |
| 3957726 | 222.1.1.12 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH | 0.62 | 51.0 | 3.80e-01 | 88.0% | 56.7% |
| 3404297 | 4.1.1.326 ↗ | beta barrels › SH3 › SH3 › SH3 › Chitin_bind_4 | 0.61 | 41.0 | 4.67e-01 | 100.0% | 94.5% |
| 5075159 | 844.1.1.2 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR | 0.61 | 47.0 | 3.65e-01 | 82.7% | 60.6% |
| 5076337 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.61 | 37.0 | 4.07e-01 | 85.3% | 76.7% |
| 5045320 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.61 | 37.0 | 4.00e-01 | 84.0% | 75.0% |
| 5039724 | 243.5.1.0 ↗ | a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region | 0.60 | 49.0 | 4.56e-01 | 89.3% | 72.6% |
| 3203885 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.58 | 44.0 | 3.45e-01 | 84.0% | 70.3% |
| 3684934 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.58 | 44.0 | 3.22e-01 | 82.7% | 44.8% |
| 3655121 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.56 | 48.0 | 3.00e-01 | 100.0% | 35.7% |
| 4929797 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.54 | 37.0 | 4.01e-01 | 100.0% | 89.8% |
| 3993013 | 5.1.4.90 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Itfg2 | 0.54 | 47.0 | 3.14e-01 | 100.0% | 80.6% |
| 3586559 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 45.0 | 4.30e-01 | 90.7% | 89.4% |
| 3172098 | 243.6.1.4 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA | 0.54 | 45.0 | 4.28e-01 | 100.0% | 77.8% |
| 4243634 | 4325.1.1.0 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like | 0.53 | 40.0 | 4.06e-01 | 94.7% | 81.3% |
| 4031519 | 3425.1.1.1 ↗ | a+b three layers › Two-component system yycF/yycG regulatory protein yycH-like › YycH N-terminal domain › YycH N-terminal domain › YycH | 0.53 | 43.0 | 3.51e-01 | 89.3% | 47.6% |
| 3181119 | 5.1.4.169 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd | 0.52 | 44.0 | 2.84e-01 | 100.0% | 81.1% |
| 4102120 | 220.1.1.190 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26660 | 0.52 | 46.0 | 3.97e-01 | 100.0% | 65.8% |
| 3783958 | 9.16.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › Hypothetical protein Atu4866 › Hypothetical protein Atu4866 › Rot1 | 0.52 | 41.0 | 3.29e-01 | 89.3% | 93.3% |
| 3788224 | 243.6.1.4 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA | 0.51 | 45.0 | 4.20e-01 | 100.0% | 83.2% |
| 3455310 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.51 | 42.0 | 2.78e-01 | 90.7% | 39.3% |
| 4188237 | 4325.1.1.1 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 | 0.50 | 35.0 | 3.98e-01 | 94.7% | 100.0% |