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NC_004686.2__NP_955477.1__PBI_CHE9D_97__00097
Bact-VirNC_004686.2__NP_955477.1__PBI_CHE9D_97__00097
Identity
- Accession:
- NC_004686 ↗
- Kingdom:
- phage
Quality
96.3
mean pLDDT
Taxonomy
TaxID: 2907834
Cluster
View cluster (8 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-51
Domain cluster:
rep: KX557288.1__AON97505.1__SEA_CHEWYVIII_84__00084__D4-50
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1winA01 | 3.30.479.30 | Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › Band 7 domain | 0.59 | 50.0 | 3.89e-01 | 100.0% | 81.2% |
| 1flmA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 43.0 | 3.25e-01 | 91.8% | 41.8% |
| 2jl6101 | 2.20.150.30 | Mainly Beta › Single Sheet › putative 5-dehydro-2- deoxygluconokinase like fold › | 0.51 | 32.0 | 3.36e-01 | 89.8% | 69.8% |
| 2cc3A00 | 3.10.450.230 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein | 0.51 | 38.0 | 2.83e-01 | 85.7% | 51.4% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2106023 | 230.6.1.1 ↗ | a+b two layers › T-fold › 40S ribosomal protein S3A C-terminal domain › 40S ribosomal protein S3A C-terminal domain › Ribosomal_S3Ae | 0.70 | 49.0 | 3.82e-01 | 75.5% | 84.3% |
| 4547928 | 11.1.1.61 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Hemocyanin_C | 0.59 | 40.0 | 2.79e-01 | 100.0% | 22.6% |
| 3312219 | 706.2.1.5 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G › Tim44 | 0.57 | 44.0 | 3.87e-01 | 100.0% | 57.1% |
| 5027891 | 230.6.1.1 ↗ | a+b two layers › T-fold › 40S ribosomal protein S3A C-terminal domain › 40S ribosomal protein S3A C-terminal domain › Ribosomal_S3Ae | 0.56 | 41.0 | 3.46e-01 | 83.7% | 85.3% |
| 4394244 | 230.6.1.1 ↗ | a+b two layers › T-fold › 40S ribosomal protein S3A C-terminal domain › 40S ribosomal protein S3A C-terminal domain › Ribosomal_S3Ae | 0.56 | 42.0 | 3.40e-01 | 89.8% | 73.9% |
| 4481016 | 243.1.1.6 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › VirB8 | 0.51 | 37.0 | 2.72e-01 | 81.6% | 51.4% |