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NC_004688.1__NP_818471.1__Omega_gp171__00170
Bact-VirNC_004688.1__NP_818471.1__Omega_gp171__00170
Identity
- Accession:
- NC_004688 ↗
- Kingdom:
- phage
Quality
70.0
mean pLDDT
Taxonomy
TaxID: 2907835
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 139-177
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3goxA02 | 3.30.60.130 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.88 | 81.0 | 7.17e-01 | 100.0% | 79.6% |
| 1wimA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.78 | 61.0 | 4.65e-01 | 97.4% | 37.2% |
| 2gviA03 | 3.30.60.20 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.72 | 54.0 | 5.63e-01 | 94.9% | 94.1% |
| 2zetC00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.72 | 57.0 | 3.81e-01 | 94.9% | 24.1% |
| 2epbA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.72 | 48.0 | 4.09e-01 | 71.8% | 67.6% |
| 7yuiB01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.69 | 52.0 | 4.13e-01 | 94.9% | 38.6% |
| 1zbdB00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.68 | 59.0 | 4.16e-01 | 97.4% | 33.3% |
| 5tabA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.68 | 55.0 | 4.94e-01 | 92.3% | 66.0% |
| 2yt5A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.63 | 52.0 | 4.46e-01 | 97.4% | 66.7% |
| 4n4fA02 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.62 | 48.0 | 4.84e-01 | 92.3% | 87.5% |
| 5tdrA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.61 | 51.0 | 4.26e-01 | 94.9% | 52.9% |
| 2xzm500 | 3.30.1740.20 | Alpha Beta › 2-Layer Sandwich › first zn-finger domain of poly(adp-ribose) polymerase-1 › Ribosomal protein S26 | 0.60 | 48.0 | 3.74e-01 | 94.9% | 65.3% |
| 3aslA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.59 | 49.0 | 4.19e-01 | 97.4% | 58.8% |
| 5fb0C01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.58 | 45.0 | 4.03e-01 | 94.9% | 59.0% |
| 2miqA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.56 | 46.0 | 3.62e-01 | 100.0% | 41.5% |
| 4nu0A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 37.0 | 2.38e-01 | 84.6% | 13.7% |
| 2ayjA00 | 4.10.1060.50 | Few Secondary Structures › Irregular › ZNF265 like › | 0.54 | 35.0 | 3.31e-01 | 97.4% | 46.4% |
| 4iupB01 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.54 | 40.0 | 3.60e-01 | 87.2% | 69.4% |
ECOD (58)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4979944 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.96 | 86.0 | 8.52e-01 | 94.9% | 92.5% |
| 1002459 | 378.1.1.13 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › His_Me_b4a2 | 0.88 | 81.0 | 7.27e-01 | 100.0% | 82.7% |
| 3957054 | 377.1.1.87 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › DUF4193 | 0.83 | 65.0 | 7.07e-01 | 94.9% | 100.0% |
| 3397474 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.81 | 66.0 | 6.63e-01 | 94.9% | 87.5% |
| 3199914 | 377.1.1.22 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Stc1 | 0.81 | 69.0 | 6.88e-01 | 94.9% | 90.0% |
| 3634446 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.79 | 62.0 | 5.89e-01 | 94.9% | 73.3% |
| 3698386 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.79 | 70.0 | 6.19e-01 | 97.4% | 90.9% |
| 3733728 | 376.1.3.31 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-4CXXC_R1 | 0.78 | 62.0 | 4.97e-01 | 97.4% | 43.8% |
| 3326051 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.78 | 63.0 | 4.73e-01 | 100.0% | 36.8% |
| 4957868 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.77 | 58.0 | 6.02e-01 | 94.9% | 91.4% |
| 3962784 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.75 | 61.0 | 6.42e-01 | 94.9% | 97.1% |
| 3924159 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.75 | 59.0 | 4.47e-01 | 94.9% | 37.8% |
| 5042937 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.74 | 57.0 | 5.07e-01 | 97.4% | 60.0% |
| 4998890 | 377.1.1.7 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-dskA_traR | 0.73 | 55.0 | 5.27e-01 | 94.9% | 71.1% |
| 3702126 | 376.1.1.27 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 | 0.73 | 56.0 | 4.36e-01 | 92.3% | 38.8% |
| 5016275 | 377.1.1.7 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-dskA_traR | 0.73 | 55.0 | 5.72e-01 | 94.9% | 91.4% |
| 5008357 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.73 | 54.0 | 5.60e-01 | 94.9% | 91.4% |
| 8199 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.72 | 54.0 | 5.67e-01 | 94.9% | 97.0% |
| 3700533 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.72 | 55.0 | 3.35e-01 | 94.9% | 13.0% |
| 3830263 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.72 | 58.0 | 5.39e-01 | 97.4% | 70.0% |
| 4946657 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.72 | 58.0 | 4.89e-01 | 97.4% | 53.8% |
| 3606495 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.71 | 61.0 | 5.20e-01 | 97.4% | 59.4% |
| 4985634 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.71 | 58.0 | 4.99e-01 | 94.9% | 57.1% |
| 3700825 | 376.1.3.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE | 0.69 | 61.0 | 4.50e-01 | 97.4% | 44.2% |
| 4442858 | 931.1.1.15 ↗ | few secondary structure elements › Metallothionein › Metallothionein › Metallothionein › PF26927 | 0.69 | 51.0 | 5.29e-01 | 94.9% | 91.4% |
| 3706927 | 376.1.3.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE | 0.69 | 61.0 | 5.20e-01 | 97.4% | 70.0% |
| 3599075 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.68 | 60.0 | 5.31e-01 | 97.4% | 76.4% |
| 3592068 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.68 | 53.0 | 4.73e-01 | 97.4% | 58.6% |
| 3301384 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.68 | 60.0 | 5.32e-01 | 97.4% | 70.9% |
| 3636589 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.67 | 55.0 | 4.24e-01 | 97.4% | 40.0% |
| 4466003 | 376.1.3.44 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › Siva | 0.67 | 55.0 | 4.71e-01 | 97.4% | 56.9% |
| 5031996 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.67 | 59.0 | 5.23e-01 | 97.4% | 70.9% |
| 3745376 | 376.1.3.4 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_2 | 0.67 | 58.0 | 4.66e-01 | 97.4% | 54.7% |
| 3225705 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.67 | 56.0 | 5.35e-01 | 94.9% | 82.2% |
| 3718357 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.67 | 50.0 | 4.91e-01 | 97.4% | 75.6% |
| 2771913 | 376.1.3.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD | 0.66 | 54.0 | 4.76e-01 | 94.9% | 61.3% |
| 3717537 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.66 | 50.0 | 4.54e-01 | 94.9% | 61.8% |
| 3705580 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.65 | 56.0 | 3.22e-01 | 100.0% | 13.0% |
| 3466575 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.65 | 56.0 | 4.70e-01 | 97.4% | 63.1% |
| 3228380 | 376.1.3.18 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD_5 | 0.65 | 52.0 | 4.20e-01 | 94.9% | 45.6% |
| 3680961 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.65 | 53.0 | 5.00e-01 | 97.4% | 76.0% |
| 3701455 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.64 | 54.0 | 4.90e-01 | 97.4% | 74.5% |
| 3846283 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.63 | 51.0 | 4.84e-01 | 100.0% | 76.0% |
| 3372361 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.63 | 50.0 | 5.04e-01 | 94.9% | 92.5% |
| 3230855 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.63 | 50.0 | 3.53e-01 | 94.9% | 33.3% |
| 3301386 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.62 | 51.0 | 4.37e-01 | 94.9% | 58.5% |
| 3705738 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.62 | 51.0 | 4.46e-01 | 94.9% | 63.3% |
| 3481685 | 376.1.3.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › RIM2a_ZnF | 0.61 | 51.0 | 4.79e-01 | 97.4% | 74.0% |
| 3534273 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.61 | 48.0 | 4.83e-01 | 97.4% | 92.5% |
| 3594353 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.60 | 48.0 | 4.26e-01 | 100.0% | 80.0% |
| 3993634 | 376.1.3.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD | 0.60 | 48.0 | 4.50e-01 | 94.9% | 78.0% |
| 5004620 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.60 | 41.0 | 4.09e-01 | 92.3% | 70.0% |
| 3262764 | 70.3.1.11 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SET, zf-MYND | 0.60 | 45.0 | 2.93e-01 | 92.3% | 16.7% |
| 3411509 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.58 | 46.0 | 4.50e-01 | 92.3% | 84.4% |
| 3300469 | 377.9.1.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-MYND | 0.57 | 45.0 | 4.27e-01 | 97.4% | 74.0% |
| 3928190 | 2003.1.4.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › DHS-like NAD/FAD-binding domain › SIR2 | 0.56 | 42.0 | 2.62e-01 | 97.4% | 30.0% |
| 3177203 | 375.14.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) | 0.56 | 42.0 | 4.18e-01 | 94.9% | 80.0% |
| None | — | 0.55 | 38.0 | 2.46e-01 | 84.6% | 13.8% |