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NC_004689.1__NP_818582.1__Barnyardp044__00044
Bact-VirNC_004689.1__NP_818582.1__Barnyardp044__00044
Identity
- Accession:
- NC_004689 ↗
- Kingdom:
- phage
Quality
80.8
mean pLDDT
Taxonomy
TaxID: 205880
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-57
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3fbyA01 | 2.10.25.10 | Mainly Beta › Ribbon › Laminin › Laminin | 0.69 | 37.0 | 3.98e-01 | 78.6% | 61.7% |
| 2dk1A00 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.59 | 38.0 | 3.97e-01 | 73.2% | 72.0% |
| 2x5cA01 | 3.30.70.3590 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 45.0 | 3.90e-01 | 85.7% | 58.2% |
| 1h2iA01 | 3.30.390.80 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 | 0.57 | 41.0 | 3.12e-01 | 78.6% | 91.9% |
| 2h1eA02 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.57 | 39.0 | 3.96e-01 | 71.4% | 94.5% |
| 2z2mD01 | 3.90.1310.10 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) | 0.57 | 39.0 | 3.84e-01 | 71.4% | 100.0% |
| 1qmeA01 | 3.90.1310.10 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) | 0.56 | 40.0 | 3.36e-01 | 75.0% | 74.0% |
| 2v90C00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.55 | 43.0 | 3.66e-01 | 85.7% | 75.3% |
| 5n6lA01 | 3.60.110.10 | Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase | 0.55 | 44.0 | 3.00e-01 | 100.0% | 59.5% |
| 2g23K04 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.55 | 39.0 | 2.80e-01 | 78.6% | 84.7% |
| 2m2fA00 | 4.10.70.30 | Few Secondary Structures › Irregular › Echistatin › | 0.55 | 39.0 | 3.83e-01 | 78.6% | 71.0% |
| 2pw4A00 | 1.10.3300.10 | Mainly Alpha › Orthogonal Bundle › Jann2411-like fold › Jann2411-like domain | 0.54 | 44.0 | 3.15e-01 | 96.4% | 30.6% |
| 7nitA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 42.0 | 3.49e-01 | 96.4% | 68.7% |
| 1jv2B04 | 4.10.1240.30 | Few Secondary Structures › Irregular › Hormone receptor fold › | 0.52 | 34.0 | 3.04e-01 | 71.4% | 44.2% |
| 3uw8A02 | 1.10.420.10 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 2 › Peroxidase, domain 2 | 0.52 | 41.0 | 3.15e-01 | 87.5% | 44.8% |
| 1feuA01 | 2.40.240.10 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P | 0.52 | 36.0 | 3.11e-01 | 75.0% | 100.0% |
| 5os9A00 | 2.40.330.10 | Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain | 0.51 | 38.0 | 3.15e-01 | 85.7% | 43.5% |
| 6guuA01 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 35.0 | 3.56e-01 | 75.0% | 88.9% |
| 4lb0A02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.51 | 41.0 | 3.09e-01 | 98.2% | 76.8% |
| 2vhjA02 | 2.30.270.20 | Mainly Beta › Roll › duf1285 protein fold › | 0.51 | 35.0 | 3.42e-01 | 80.4% | 66.1% |
| 4bpnW02 | 2.40.50.740 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain | 0.50 | 33.0 | 3.45e-01 | 71.4% | 100.0% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3852406 | 389.1.1.16 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_3 | 0.70 | 37.0 | 4.11e-01 | 78.6% | 64.4% |
| 3223830 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 41.0 | 4.29e-01 | 75.0% | 68.0% |
| 3278924 | 604.2.1.1 ↗ | alpha bundles › Spectrin repeat-like › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succ_DH_flav_C | 0.58 | 41.0 | 3.05e-01 | 75.0% | 49.0% |
| 4653170 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.56 | 39.0 | 3.36e-01 | 75.0% | 68.4% |
| 4058606 | 2.1.1.26 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB | 0.56 | 39.0 | 3.37e-01 | 73.2% | 92.2% |
| 3945427 | 2.1.1.26 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB | 0.56 | 39.0 | 3.41e-01 | 71.4% | 92.9% |
| 4046343 | 2.1.1.26 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB | 0.55 | 38.0 | 3.33e-01 | 73.2% | 92.2% |
| 3251414 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 39.0 | 3.15e-01 | 75.0% | 69.1% |
| 3170444 | 2008.6.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains › ACC_central | 0.55 | 38.0 | 2.64e-01 | 76.8% | 20.5% |
| 3821213 | 5.3.1.2 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin | 0.55 | 39.0 | 3.05e-01 | 76.8% | 42.4% |
| 4236172 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.55 | 39.0 | 3.33e-01 | 76.8% | 64.2% |
| 4285674 | 2.1.1.26 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB | 0.55 | 39.0 | 3.36e-01 | 75.0% | 92.2% |
| 3483506 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.54 | 42.0 | 3.21e-01 | 91.1% | 61.3% |
| 3800293 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.54 | 38.0 | 3.20e-01 | 75.0% | 55.9% |
| 3287567 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.54 | 40.0 | 3.52e-01 | 83.9% | 52.2% |
| 4002138 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.54 | 37.0 | 2.43e-01 | 71.4% | 86.2% |
| 3300738 | 4.1.1.7 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 | 0.52 | 45.0 | 3.30e-01 | 96.4% | 76.0% |
| 3220597 | 7515.1.1.5 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase,SGSH_C | 0.51 | 40.0 | 2.29e-01 | 85.7% | 16.6% |
| 3670690 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.50 | 44.0 | 2.71e-01 | 100.0% | 66.9% |
| 3228278 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.50 | 35.0 | 3.37e-01 | 82.1% | 64.6% |