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NC_004689.1__NP_818589.1__Barnyardp051__00051

Bact-Vir

NC_004689.1__NP_818589.1__Barnyardp051__00051

Identity

Accession:
NC_004689 ↗
Kingdom:
phage

Quality

88.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Barnyardvirus› Mycobacterium_phage_Barnyard

TaxID: 205880

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-99
PDB
Domain cluster: rep: CG_2015-01t_scaffold_1_prodigal-single.1__X__X__00035__D3-115
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4yztA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.56 44.0 3.08e-01 83.5% 85.0%
1vkpB00 3.75.10.10 Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A 0.55 50.0 3.36e-01 100.0% 46.8%
1bwdA00 3.75.10.10 Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A 0.55 38.0 2.61e-01 71.1% 39.4%
4u5pA00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.55 43.0 3.85e-01 86.6% 67.9%
3r4iA02 6.10.140.960 Special › Helix non-globular › Helix Hairpins › 0.54 31.0 3.84e-01 79.4% 91.7%
5kivA01 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.54 37.0 3.04e-01 71.1% 38.6%
1s3qG00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.53 40.0 3.41e-01 80.4% 57.7%
3ktbA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 34.0 3.31e-01 95.9% 58.5%
1vw5B00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.53 42.0 4.04e-01 86.6% 75.2%
7dd0C01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 36.0 2.67e-01 71.1% 84.0%
1akoA00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.52 45.0 3.34e-01 99.0% 71.3%
1xhcA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 38.0 3.61e-01 100.0% 64.4%
4k7zA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 39.0 3.73e-01 99.0% 67.5%
1ebdA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 39.0 3.64e-01 100.0% 65.3%
3d1cA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 39.0 3.02e-01 84.5% 91.4%
2b4qB00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 41.0 3.09e-01 87.6% 66.5%
8dqaA01 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.51 40.0 4.04e-01 86.6% 85.7%
4dg8A02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.51 40.0 4.11e-01 100.0% 92.4%
1cmwA01 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.50 40.0 3.53e-01 88.7% 74.2%
4eqsA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 37.0 3.29e-01 100.0% 53.1%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3278058 327.7.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.60 42.0 4.60e-01 85.6% 88.7%
4014817 327.7.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.58 42.0 4.50e-01 86.6% 87.1%
2631918 3696.1.1.2 ↗ a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › XPB_DRD 0.57 27.0 3.33e-01 82.5% 70.7%
3730197 327.7.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer 0.57 41.0 4.30e-01 86.6% 82.2%
5051078 327.7.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer 0.57 41.0 4.14e-01 86.6% 76.8%
5029779 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.56 48.0 4.53e-01 96.9% 83.3%
5022655 327.11.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.55 41.0 3.77e-01 85.6% 60.2%
4297923 288.1.1.2 ↗ a+b four layers › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › CheD 0.55 44.0 3.73e-01 87.6% 94.5%
4027159 2008.1.1.86 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAP 0.54 42.0 3.98e-01 99.0% 69.6%
3838474 2008.1.1.78 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_endonuc 0.54 48.0 3.99e-01 100.0% 90.9%
4567825 288.1.1.2 ↗ a+b four layers › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › CheD 0.53 42.0 3.70e-01 87.6% 91.6%
223513 315.1.1.3 ↗ a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › CHMI 0.53 41.0 3.84e-01 86.6% 75.8%
4154473 288.1.1.2 ↗ a+b four layers › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › CheD 0.53 42.0 3.74e-01 87.6% 93.8%
4408393 2003.1.5.174 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr, Methyltransf_15 0.53 46.0 3.14e-01 100.0% 46.0%
3627415 224.1.1.1 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.53 45.0 4.06e-01 100.0% 85.5%
3402688 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.52 46.0 3.54e-01 95.9% 56.1%
None — 0.52 42.0 3.60e-01 89.7% 89.7%
3890221 224.1.1.1 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.51 44.0 4.01e-01 100.0% 86.4%
3700637 2003.1.2.7 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2 0.51 42.0 2.94e-01 92.8% 72.4%
4362441 327.5.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins 0.51 44.0 4.10e-01 100.0% 86.2%
3193528 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.51 43.0 3.15e-01 96.9% 74.2%
3855222 2008.1.1.127 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › FAST_2+RAP 0.51 45.0 3.82e-01 95.9% 74.8%
1780182 327.5.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins 0.51 43.0 3.78e-01 94.8% 92.5%
3812516 131.1.1.15 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › Ppx-GppA_III 0.51 44.0 3.50e-01 100.0% 92.9%
3628745 224.1.1.1 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.50 43.0 3.88e-01 100.0% 83.4%
None — 0.50 41.0 2.82e-01 90.7% 69.0%
4013664 224.1.1.0 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like 0.50 44.0 3.94e-01 100.0% 89.3%
D2 high residues 133-215
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5w2fA01 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.62 41.0 4.13e-01 78.3% 66.3%
3eeaA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.61 45.0 3.73e-01 79.5% 69.9%
2x3gA00 3.30.70.1910 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 46.0 4.15e-01 100.0% 58.6%
1blxA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 45.0 4.39e-01 80.7% 97.8%
3bqwA01 3.15.30.10 Alpha Beta › Super Roll › putative capsid protein of prophage fold › putative capsid protein of prophage domain like 0.60 49.0 3.75e-01 92.8% 85.2%
2raaA00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.60 40.0 3.14e-01 73.5% 32.0%
5l09B00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.59 43.0 3.53e-01 78.3% 68.3%
2bddA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.59 40.0 3.53e-01 71.1% 100.0%
6cc0A01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.58 43.0 3.49e-01 79.5% 67.7%
3ix3A00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.58 42.0 3.48e-01 79.5% 68.1%
2f9aA01 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.57 43.0 2.84e-01 83.1% 69.1%
4iuhA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.57 42.0 3.56e-01 79.5% 77.6%
4g3wA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.56 41.0 3.57e-01 78.3% 75.2%
2yweA03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.55 34.0 3.50e-01 71.1% 62.2%
3duwA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 42.0 3.13e-01 83.1% 80.4%
4p27A00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.55 47.0 3.93e-01 98.8% 89.7%
4evuB00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.54 40.0 4.28e-01 92.8% 98.5%
3bzbB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 40.0 3.10e-01 80.7% 83.5%
4yj6A00 3.90.1300.10 Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain 0.54 45.0 2.86e-01 95.2% 54.3%
5hwoA00 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.54 44.0 2.86e-01 92.8% 39.7%
3vs8H00 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.53 45.0 3.05e-01 100.0% 99.5%
2c7yA00 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.53 44.0 2.90e-01 94.0% 62.4%
1uv7A00 3.30.1360.100 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM 0.53 34.0 3.54e-01 77.1% 71.1%
3h0lA00 3.90.1300.10 Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain 0.53 44.0 2.82e-01 95.2% 56.5%
1yxsA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 39.0 3.83e-01 81.9% 97.8%
4hh2B03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 37.0 3.52e-01 73.5% 97.0%
2gi3A01 3.90.1300.10 Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain 0.52 45.0 2.96e-01 98.8% 88.2%
4ubtD00 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.52 44.0 2.97e-01 100.0% 100.0%
7r3eB02 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.52 38.0 3.16e-01 80.7% 76.1%
6mhlB01 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.51 41.0 2.68e-01 91.6% 60.7%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 35.0 3.25e-01 71.1% 70.5%
3cwfA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 43.0 3.99e-01 97.6% 94.4%
2zfdB00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.51 38.0 3.50e-01 83.1% 78.4%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5073850 304.43.1.6 ↗ a+b two layers › Alpha-beta plaits › Hypothetical protein TT1725 › Hypothetical protein TT1725 › FLAD1_M 0.68 42.0 4.37e-01 71.1% 68.0%
3283943 304.8.1.80 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF6196 0.68 46.0 5.01e-01 72.3% 84.3%
4475311 304.162.1.0 ↗ a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain 0.64 40.0 4.04e-01 71.1% 61.2%
3939568 2003.1.5.54 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_10 0.64 49.0 3.39e-01 83.1% 96.5%
4204243 1075.1.2.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.63 41.0 2.60e-01 77.1% 12.2%
4945567 2003.1.5.54 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_10 0.63 50.0 3.50e-01 85.5% 100.0%
4992480 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.63 37.0 3.66e-01 73.5% 53.3%
3795151 304.8.1.71 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF7636 0.63 40.0 3.79e-01 71.1% 53.0%
4975939 2003.1.5.54 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_10 0.61 49.0 3.49e-01 89.2% 98.4%
4949861 223.1.1.23 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 0.60 44.0 3.62e-01 79.5% 66.7%
3510139 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.60 44.0 3.40e-01 78.3% 55.4%
3415465 320.1.1.1 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.60 36.0 3.66e-01 71.1% 57.6%
5015712 2003.1.5.54 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_10 0.60 45.0 3.18e-01 80.7% 70.5%
2165976 310.3.1.4 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › GspL_C 0.60 39.0 4.03e-01 78.3% 70.0%
3265590 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.59 52.0 3.89e-01 100.0% 92.0%
5033257 304.126.1.0 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.59 39.0 4.08e-01 75.9% 74.7%
3952595 223.1.1.23 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 0.59 44.0 3.49e-01 80.7% 74.4%
5009922 304.126.1.7 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › FAD-oxidase_C 0.58 50.0 3.84e-01 98.8% 69.0%
3971876 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 42.0 3.43e-01 79.5% 62.9%
3582958 864.1.1.2 ↗ a+b two layers › DLC › DLC › DLC › Tctex-1 0.57 48.0 4.36e-01 97.6% 88.3%
3950174 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.57 41.0 3.40e-01 79.5% 66.5%
3279792 2003.1.5.14 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_3 0.57 43.0 3.26e-01 83.1% 81.9%
3265906 3012.1.1.4 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Hydrolase_3 0.56 42.0 3.81e-01 79.5% 59.1%
3682929 7577.1.1.0 ↗ a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases 0.56 43.0 2.89e-01 84.3% 64.1%
3411783 2003.1.5.73 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.56 41.0 2.89e-01 78.3% 64.4%
3196489 328.7.1.1 ↗ a+b two layers › IF3-like › Smr domain › Smr domain › Smr 0.56 40.0 3.67e-01 74.7% 79.1%
3241180 7581.1.1.19 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N+Thiolase_C 0.55 42.0 2.83e-01 84.3% 89.3%
3547153 304.162.1.2 ↗ a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › FLAD1_M 0.55 35.0 3.60e-01 71.1% 66.3%
3838191 304.55.1.13 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Relaxase 0.55 47.0 3.93e-01 95.2% 60.0%
3386399 3019.1.1.0 ↗ beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain 0.55 37.0 3.32e-01 71.1% 80.0%
3890461 2003.1.5.46 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS 0.55 41.0 2.84e-01 79.5% 65.4%
3530260 864.1.1.2 ↗ a+b two layers › DLC › DLC › DLC › Tctex-1 0.55 47.0 4.35e-01 97.6% 94.4%
None — 0.55 41.0 3.10e-01 80.7% 78.1%
4033671 225.1.1.3 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.55 39.0 3.20e-01 95.2% 39.4%
3719888 7581.1.1.19 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N+Thiolase_C 0.55 42.0 3.23e-01 84.3% 66.5%
None — 0.54 40.0 2.93e-01 79.5% 75.3%
3698884 304.46.1.1 ↗ a+b two layers › Alpha-beta plaits › eEF1-gamma domain › eEF1-gamma domain › EF1G 0.54 46.0 4.22e-01 100.0% 70.4%
3707331 864.1.1.2 ↗ a+b two layers › DLC › DLC › DLC › Tctex-1 0.54 46.0 4.25e-01 97.6% 90.9%
3780610 2003.1.5.320 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PrmA, Methyltransf_16 0.54 41.0 2.88e-01 83.1% 65.9%
4028393 864.1.1.2 ↗ a+b two layers › DLC › DLC › DLC › Tctex-1 0.54 47.0 4.26e-01 100.0% 98.3%
3939457 864.1.1.2 ↗ a+b two layers › DLC › DLC › DLC › Tctex-1 0.54 46.0 4.36e-01 100.0% 98.1%
3218395 2003.1.5.42 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_21 0.53 45.0 3.31e-01 100.0% 95.3%
5082316 101.1.2.187 ↗ alpha arrays › HTH › HTH › winged helix domain › Rep3_C 0.53 37.0 3.57e-01 73.5% 74.7%
4228206 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.52 36.0 3.65e-01 71.1% 98.8%
4944441 309.1.2.0 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain 0.52 36.0 2.96e-01 71.1% 39.4%
3973210 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 45.0 4.25e-01 100.0% 100.0%
3598586 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.52 31.0 2.70e-01 92.8% 37.7%
3992439 273.1.1.0 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like 0.51 44.0 3.75e-01 100.0% 85.5%
3531382 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 40.0 2.47e-01 88.0% 57.6%
2834105 7581.1.1.6 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Chal_sti_synt_C 0.51 40.0 3.46e-01 90.4% 98.6%
3943786 7581.1.1.19 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N+Thiolase_C 0.51 42.0 2.77e-01 96.4% 99.3%
198782 223.1.1.33 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_like 0.51 43.0 3.99e-01 97.6% 94.4%
3275958 848.1.1.1 ↗ a+b complex topology › Hsp33 domain › Hsp33 domain › Hsp33 domain › HSP33 0.50 37.0 2.77e-01 79.5% 74.1%